PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g084650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 288aa    MW: 33533.4 Da    PI: 6.1709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g084650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++   G g+W+ +a++ g++Rt+k+c++rw++yl
   Csa05g084650.1 21 RGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding51.91.7e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa05g084650.1  74 RGNLTPQEQLLILELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9531668IPR017930Myb domain
SuperFamilySSF466892.52E-3018115IPR009057Homeodomain-like
SMARTSM007176.3E-142070IPR001005SANT/Myb domain
PfamPF002492.7E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-222275IPR009057Homeodomain-like
CDDcd001671.27E-92368No hitNo description
PROSITE profilePS5129425.26469123IPR017930Myb domain
SMARTSM007171.4E-1473121IPR001005SANT/Myb domain
PfamPF002491.5E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2376122IPR009057Homeodomain-like
CDDcd001677.18E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEKSTKKKSF IKESEEVELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC  60
RLRWLNYLKP DIRRGNLTPQ EQLLILELHS KWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTY CCPQNNNNNN SLLVPSQSQD  180
SMMSIQKDTE FSSQNLSFSN MDGSSTSTWT VPHLMDHNNT NIVDGSMCFH EGNDQELGGY  240
VPGMEDYMRN SDISMQCHVA DGYSAYEDVT QDPMWNIDDI WQFREYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g084650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195680.0AY519568.1 Arabidopsis thaliana MYB transcription factor (At1g68320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511820.10.0PREDICTED: transcription factor MYB21-like
SwissprotQ9C9G71e-173MYB62_ARATH; Transcription factor MYB62
TrEMBLR0IBB91e-178R0IBB9_9BRAS; Uncharacterized protein
STRINGXP_010511820.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-175myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]