PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g083540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 24031.3 Da PI: 8.3567 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.8 | 1.7e-07 | 79 | 127 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ h Er+RR+ +++ e L++++P + +K + a L +++Y+ksL Csa05g083540.1 79 QRQRHVLKERKRRQGFKEKVEILQSMMPMP-----PKSDIAGNLDNVIDYLKSL 127 7999*************************9.....79999999********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.16E-7 | 77 | 127 | No hit | No description |
PROSITE profile | PS50888 | 12.481 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-11 | 79 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-5 | 79 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-8 | 79 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEGNNRKEEG IYEEEEVCSY PKIVNAVRSN DRSEQKPLQQ KLGAHPSSMP NDVTMKSDLV 60 EKVDEHQPDE ESNRPAKLQR QRHVLKERKR RQGFKEKVEI LQSMMPMPPK SDIAGNLDNV 120 IDYLKSLLYQ VDLMNTAYAA GANSAYMLPY YGAQPPSMSP WGYYPPAIPM MPQQLMRYIP 180 QNGQGNNNMA KPDQTKPPPD QTKPSPDKTK P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 90 | LKERKRR |
2 | 86 | 91 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g083540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511813.1 | 1e-154 | PREDICTED: transcription factor bHLH109-like | ||||
TrEMBL | R0GE80 | 2e-57 | R0GE80_9BRAS; Uncharacterized protein | ||||
STRING | XP_010511813.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15032 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68240.1 | 9e-45 | bHLH family protein |