PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g075080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 339aa    MW: 38793.7 Da    PI: 5.3396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g075080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-1365112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +l + +   G  +W+++++  g+ R++k c++rw +yl
   Csa05g075080.1  65 KGPWTAEEDRKLMNFILTNGQCCWRAVPKLAGLLRCGKRCRLRWTNYL 112
                      79******************************99************97 PP
2Myb_DNA-binding49.88.1e-16124162747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       E++  +d++ qlG++ W++Ia++++ gRt++++k++w+++
   Csa05g075080.1 124 YEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 162
                      599*************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1956113IPR009057Homeodomain-like
PROSITE profilePS5129413.36560112IPR017930Myb domain
SuperFamilySSF466895.99E-2662159IPR009057Homeodomain-like
SMARTSM007171.7E-1064114IPR001005SANT/Myb domain
PfamPF002491.2E-1265112IPR001005SANT/Myb domain
CDDcd001676.53E-767112No hitNo description
PROSITE profilePS5129425.041113167IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-24114167IPR009057Homeodomain-like
SMARTSM007171.6E-13117165IPR001005SANT/Myb domain
PfamPF002492.0E-13124162IPR001005SANT/Myb domain
CDDcd001675.44E-10125163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
QLSLQLAITL TLSGQRQEIE KDRKNKQSIN SVLFINLKSR RNSIQSEGER EMGRQPCCDK  60
VGLKKGPWTA EEDRKLMNFI LTNGQCCWRA VPKLAGLLRC GKRCRLRWTN YLRPDLKRGL  120
LSDYEEKMVI DLHSQLGNRW SKIASHLPGR TDNEIKNHWN THIKKKLRKM GIDPLTHKPL  180
SIVEQEDEEP VKKLQKVQMP LQEPAEKNFE EPTSYCLTKE SNNTKNTSRL EESLDDDQFN  240
AMNLEYGVED VPLIDPESLE LICSNSTMSS STSTPSNSSN DSSFLKDLQF PDFEWSDYGN  300
SNNNDGVDNI IENNMMSLWD VDDFSSWDLL LSSTFGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27631675108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g075080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195651e-175AY519565.1 Arabidopsis thaliana MYB transcription factor (At1g66230) mRNA, complete cds.
GenBankBT0289041e-175BT028904.1 Arabidopsis thaliana unknown protein (At1g66230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511551.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-149MYB20_ARATH; Transcription factor MYB20
TrEMBLR0IBN61e-173R0IBN6_9BRAS; Uncharacterized protein
STRINGXP_010511551.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-127myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]