PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g073780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17369.1 Da    PI: 8.7545
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g073780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-132411150
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    vtf kR++ i  K +ELS LC+a+v  +++s++g ly++ 
  Csa05g073780.1  2 VTFYKRKKKIYTKLSELSLLCGADVGFLVYSNSGILYTFG 41
                    9*************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003196.1E-14140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.615144IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-4243IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-14257IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-6621IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-62142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVTFYKRKKK IYTKLSELSL LCGADVGFLV YSNSGILYTF GSPSFEVVAK RFLNGEGSSS  60
TSLPQQSNID AQHKKKMEEL CKVYNNLLKK ADAEQQKGMV MAKAEAEALP VEKDAWWRVD  120
PTKIKDKEVL KQLMEKYEDL YEKLCDEVIA RN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g073780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513573.11e-104PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLD7LMQ24e-58D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010513573.11e-103(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-53AGAMOUS-like 64