PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g073600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 629aa    MW: 71706.5 Da    PI: 6.4336
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g073600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5561341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v 
  Csa05g073600.1   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Csa05g073600.1 100 S-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                     9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-644156IPR003441NAC domain
PROSITE profilePS5100560.8996156IPR003441NAC domain
PfamPF023653.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECES KSGIQDAYAL CRVFKKSGLT NKIEEKQHHV MKNKATTSEQ  180
STSSTCLYSD GMYENLENSE YPISPDTGGL TQLGNISSTS DIETIENKWS QFMSHDTSFN  240
FPAQSQYGTI SYPPTKVEIE LECARLQNRM LPTVPPLYVE DLTHGEYLGN NVANDTDEML  300
SKIIALAQAS HEPRNSLDSW DGGSASGTFN GDFNYSGEKL ACVHANMKAV DMQDHYGRFK  360
EERLVENLRW VGASSKELEK SFIEEHSTVV PIEDIWSYHR DTQEHENQDL MDVNNNNGDV  420
DDAFTLEFSE NEHNENLLNK TDHDTTSSPR FDVVKKVEVS HGLFVTTRQV TNTFFQQIVP  480
SQTVIVHINP TGVNECCHNV TSKETDRVRE KINPQTNGVV STFLGQWRKL AYVFGFIPML  540
LLMRCVHQRG YTNKNQSSER YSTQPKIGDC NNPGTILMME NGVERRKIWK KEKGRVDERG  600
LWVQDSFLLK KLGLSLAIIL AVSTISLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B5e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A5e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B5e-56116212171NO APICAL MERISTEM PROTEIN
4dul_A5e-56116212171NAC domain-containing protein 19
4dul_B5e-56116212171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g073600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-178CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P191e-178AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511513.10.0PREDICTED: NAC domain-containing protein 86 isoform X1
TrEMBLR0HWP30.0R0HWP3_9BRAS; Uncharacterized protein
STRINGXP_010511513.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28