PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g072040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32360.8 Da PI: 5.9894 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl Csa05g072040.1 43 KGAWTAEEDSLLRQCIEKYGEGKWHQVPFRAGLNRCRKSCRLRWLNYL 90 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 6e-15 | 96 | 141 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +gr +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Csa05g072040.1 96 KGRLNSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 141 5777889***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 38 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.073 | 38 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-28 | 41 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-14 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 43 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-10 | 45 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 93 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.377 | 95 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-13 | 97 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-10 | 102 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
EDLRSHNPLF LDFLLIHFKI LWLDTCYFLS LRSMEGSSKG LTKGAWTAEE DSLLRQCIEK 60 YGEGKWHQVP FRAGLNRCRK SCRLRWLNYL KPSIKKGRLN SDEVDLLIRL HKLLGNRWSL 120 IAGRLPGRTA NDVKNYWNTH LSKKYEPGCK TKMKKKNIIS PPTTTTVQKV NVFKPRPRSF 180 TVNKDCSHLN VLPEVDITPS SNGLSIDNVC EDSITSDKDD EKDDFLNILI NEDDMWLENL 240 LDDSQETDAV VPEATTNEQG ATLAFDVEQL WSLFDGETVE LD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-22 | 41 | 144 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g072040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF062915 | 0.0 | AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds. | |||
GenBank | AF325124 | 0.0 | AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511463.1 | 0.0 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9ZTC3 | 1e-135 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | D7KTP5 | 1e-143 | D7KTP5_ARALL; MYB transcription factor | ||||
STRING | XP_010511463.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-137 | myb domain protein 90 |