PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g072000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 372aa    MW: 41816.3 Da    PI: 8.9411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g072000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll +++ ++G g W+ ++ + g++R++k c++rw++yl
   Csa05g072000.1 10 KGTWTAEEDSLLRQCIDKYGEGKWHQVPLRAGLNRCGKGCRLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding50.64.4e-1663106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T +E +ll++++++lG++ W++Ia +++ gRt++++k++w++
   Csa05g072000.1  63 RGKFTSDEVDLLIRLHRLLGNR-WSLIAGRLP-GRTANDVKNYWNT 106
                      89********************.*********.***********97 PP
3Myb_DNA-binding28.92.7e-09189231148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd ll +++ ++G g W+ ++ +       +++k++w+++l
   Csa05g072000.1 189 KGAWTGEEDTLLRQCIDMYGEGKWHQVPLRAA-----NDVKNYWNTHL 231
                      79************************666665.....********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21560IPR009057Homeodomain-like
PROSITE profilePS5129424.926561IPR017930Myb domain
SuperFamilySSF466891.05E-287104IPR009057Homeodomain-like
SMARTSM007172.4E-13959IPR001005SANT/Myb domain
PfamPF002494.9E-141057IPR001005SANT/Myb domain
CDDcd001678.95E-91257No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2161107IPR009057Homeodomain-like
SMARTSM007178.6E-1562110IPR001005SANT/Myb domain
PROSITE profilePS5129417.21162112IPR017930Myb domain
PfamPF002491.1E-1463106IPR001005SANT/Myb domain
CDDcd001672.33E-1065108No hitNo description
SuperFamilySSF466897.9E-10184234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-13184235IPR009057Homeodomain-like
PROSITE profilePS5129416.687184235IPR017930Myb domain
SMARTSM007173.0E-8188233IPR001005SANT/Myb domain
PfamPF002493.3E-8189231IPR001005SANT/Myb domain
CDDcd001671.40E-7191231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEGSSNGLKK GTWTAEEDSL LRQCIDKYGE GKWHQVPLRA GLNRCGKGCR LRWLNYLKPS  60
IKRGKFTSDE VDLLIRLHRL LGNRWSLIAG RLPGRTANDV KNYWNTNFSC CKSKTRKREN  120
TSSATSPIQR INIIKPLPQS YNDCSRLNWQ PEVGFGKASN KDGSITCNKD NQKDESVNNL  180
KAASNGLRKG AWTGEEDTLL RQCIDMYGEG KWHQVPLRAA NDVKNYWNTH LSKNHEPCCK  240
TKIKKKIITS PPTTSAQKIE VLKPRPRSFS SKSGFSYLNC FPKVNVIPPC SGLKNNNVCG  300
SSITCGKEEE NYESVYNLMD GKNIWLERLL EESQEADAPG PGATTTETGA TLAFDVEQLW  360
NLFDEETMEL D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2181085104B-MYB
1h8a_C2e-21810825124MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g072000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629156e-91AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds.
GenBankAF3251246e-91AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513544.11e-129PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV93e-76MY113_ARATH; Transcription factor MYB113
TrEMBLD7KTN86e-80D7KTN8_ARALL; Uncharacterized protein
STRINGXP_010513544.11e-128(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-78myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]