PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g060660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 304aa    MW: 34711.8 Da    PI: 6.2877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g060660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13131182155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i+  A+++I++L+
  Csa05g060660.1 131 QRMTHIAVERNRRKMMNEYLSVLRSLMPDS---YVQRCDQASIVGGAINFIRELE 182
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15130193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-11130186No hitNo description
PfamPF000101.6E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-8136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALEGVFLQH DNIYSYNGKE AYSNLYIEDE PHFYDLQASL TCLDNQTENY SSTFLQEDHY  60
YENTTTTFLH QPLPEIAISD EANITPNGNS SGSPNYDMRY HRDNEINTSG NKKATRRRTR  120
VKKNKEEINN QRMTHIAVER NRRKMMNEYL SVLRSLMPDS YVQRCDQASI VGGAINFIRE  180
LEHRVHHLSI NGEQNEKSFS DGEIDISSAT PFSDTFKLPQ YSMGSSSVSE NVVVENALAD  240
IEVSLVESHA SLKIRSRRRP KLVLNLVSAL QSLGFIILHL NVSTVSEFIL YCFSTKVRFC  300
FNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131142RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g060660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511217.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T43e-56BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ41e-172D7KPZ4_ARALL; Uncharacterized protein
STRINGXP_010511217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]