PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g041450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YB

Protein Properties

Length: 263aa MW: 29065.3 Da PI: 3.9045

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g041450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.3	1.8e-13	10	101	7	93
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +lP+a v r++k+ l + + i k+a e + fi +++s a+d c+ +r+t+++dd++ al ++ f +++eplk+ l+ +++ Csa05g041450.1 10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSSTANDFCKDARRQTMKADDVFKALDEMDFSEFLEPLKASLEDFKKK 101 69********999752222356899*********************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-24	10	99	IPR009072	Histone-fold
Pfam	PF00808	5.3E-8	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.18E-18	12	101	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MESEKVVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSSTAND 60 FCKDARRQTM KADDVFKALD EMDFSEFLEP LKASLEDFKK KNAGKRAGGG AAASKPAGGA 120 AAKPTETKKR KQEGPSTQKN ARKSKRDEGG NKNDEENEND NTEEENGNDE ENENDDENTE 180 ENGNDEESEN ENGNDEESEM EHEENEKEDE GNSMEDNGNE NDESGNEDIS MEEIGSEDGE 240 DNDNNNSSNS SGEEVEGDEE DD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g041450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004083	1e-143	BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510771.1	0.0	PREDICTED: putative DNA helicase INO80
TrEMBL	A0A1J3D4Q6	4e-86	A0A1J3D4Q6_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
TrEMBL	A0A1J3IA23	3e-86	A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRING	XP_010510771.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-71	nuclear factor Y, subunit B11