PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g039860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 611aa    MW: 68266.5 Da    PI: 7.2937
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g039860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094705022254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ ++++ LA++++L+ +qV++WF N R +
  Csa05g039860.1 470 HPYPTDSDKQMLATQTSLSRNQVSNWFINARVR 502
                     89*****************************88 PP
2BELL87.41.6e-28340408472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +++ k+akLl l eeV+k Yk y++qlqtv+ssF+ vagl++a+p++slAlk+i r+F++Lk ai+eq+
  Csa05g039860.1 340 KNRLKRAKLLFLEEEVCKGYKLYNHQLQTVVSSFDSVAGLNTAAPFISLALKRIFRSFKALKAAISEQL 408
                     5789***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.8E-44272406IPR006563POX domain
PfamPF075264.4E-26277405IPR006563POX domain
PROSITE profilePS5007111.774443506IPR001356Homeobox domain
SMARTSM003899.4E-10446510IPR001356Homeobox domain
CDDcd000862.41E-11446507No hitNo description
SuperFamilySSF466892.57E-16448512IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-27449510IPR009057Homeodomain-like
PfamPF059206.8E-18463502IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MIKPESHVVQ QIRRDKFRAE HMNDFPNTWD HHQHQNIRIP NNLDLIGILQ NQIISVPVQT  60
DLYQDSTTTF MNMPQSIHRD PQGSGSWRSS DLSQPSSLNC SEVNYGYDQA GIRPSNVGDL  120
FSNHFSSRNH CPLDNIAQSS MTSRSEVSCL KDCVPFLGQN NLQNVVTVAC SGTGNEASKS  180
SYDRGSPSGS YRGELLFLPS LEKQSVPHNA SQWNHEPSCK KPVNISASSH TNKRGFSLSL  240
SSEVTPFRNG GNATVSSTMN IHGDLGPLGP FTGYASILKS SRYLEPAQKM LEEFCISYAL  300
KEISGLESTS MDDDDLSEML TSTNHAVDGF SSSSEQIEPK NRLKRAKLLF LEEEVCKGYK  360
LYNHQLQTVV SSFDSVAGLN TAAPFISLAL KRIFRSFKAL KAAISEQLKQ ISSQYSSGDD  420
NNIFQKQQRS LIGNIFGFES PQQHIWRPQR GLPERAVAVL RAWLFDHFLH PYPTDSDKQM  480
LATQTSLSRN QVSNWFINAR VRLWKPMVEE IHMLETKVIK NTDSTYNMEP SNGPNTCSSP  540
SRKQTLMDLP GTKRPRLDYV CDMNMMEFNT GLGNVSLTLG LRRGVDNVIQ TQTQDPQFGT  600
GGQMFHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-144495031065Homeobox protein PKNOX1
3k2a_A2e-14452510563Homeobox protein Meis2
3k2a_B2e-14452510563Homeobox protein Meis2
4xrs_A1e-14452509158Homeobox protein Meis1
4xrs_B1e-14452509158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g039860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191530.0AK119153.1 Arabidopsis thaliana At2g27990 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL21-50-D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510706.10.0PREDICTED: BEL1-like homeodomain protein 8
SwissprotQ9SJJ30.0BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLR0HX260.0R0HX26_9BRAS; Uncharacterized protein
STRINGXP_010510706.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.10.0BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]