PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g038330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 711aa MW: 78227.3 Da PI: 8.0702 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.5e-24 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ Csa05g038330.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSE 209 89****************************987555555..8************************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Csa05g038330.1 210 SGDLCVGIRRA 220 9999****997 PP | |||||||
2 | Auxin_resp | 114.6 | 9.1e-38 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Csa05g038330.1 287 AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 370 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-37 | 111 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-29 | 115 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.15E-21 | 118 | 219 | No hit | No description |
Pfam | PF02362 | 5.9E-22 | 119 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 119 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-32 | 288 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.653 | 597 | 685 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADSET DEVFAKITLL PLPGNNDLDL DNNNDAVLGL TPSSSSDGNA NVNEKPASFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTVI AKDIHGETWK FRHIYRGTPR 180 RHLLTTGWST FVNQKKLIAG DSIVFLRSES GDLCVGIRRA KRGGLGSNGL GSDSPYPGFS 240 GFLRDDETTT TTTKLMMMKR NGGNDGNAAS AAAATAGRVR VEAVAEAVAR AACGQAFEVV 300 YYPRASTPEF CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR 360 WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKI RIPQPFEFPF 420 DGTKFPIFSP GGESMCYLSN DNNNNNNNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS 480 YSGNKLQSTA MFLSGFNPRH HYDNLVSRQG RGDTENSNNI SCSLTMGNPA MVHQDKKKSG 540 GGSVKTHQFL LFGQPILTEQ QVMNRKRSLE EEAQVREEKG SVARGLTCNY AFQGLETGHC 600 KVFMESEDVG RTLDLSVIGS YQELYRKLAD MFRIEERSDL LTHVVYRDAN GVIKRIGDEP 660 FSDFMRATKR LTIKMDIGGD NVRKTWITGI RNGENGIDAS TKTGPLSIFA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-78 | 7 | 391 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g038330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493569 | 0.0 | AB493569.1 Arabidopsis thaliana At2g28350 mRNA for hypothetical protein, partial cds, clone: RAAt2g28350. | |||
GenBank | AF325073 | 0.0 | AF325073.1 Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds. | |||
GenBank | AF336919 | 0.0 | AF336919.1 Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510635.1 | 0.0 | PREDICTED: auxin response factor 10 isoform X1 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | A0A384K881 | 0.0 | A0A384K881_ARATH; Auxin response factor | ||||
TrEMBL | C0SV66 | 0.0 | C0SV66_ARATH; Auxin response factor (Fragment) | ||||
STRING | XP_010510635.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |