PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g035190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 2116aa MW: 237548 Da PI: 5.2219 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 358.9 | 7.5e-110 | 335 | 704 | 1 | 369 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts +s+ l+a++++ v+P+ k++ Csa05g035190.1 335 LRTMLVSCAQAVSINDRRTADDLLTRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---VSDMLQAYQTYISVCPFKKIAI 426 5789***************************************************************999...********************** PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN+ I++ ++++ +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g +e + etg+rLak+++++++pfe+n+ +a+++ Csa05g035190.1 427 IFANHSIMRLASTAnaKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNIPFEYNA-IAQKW 520 *******99877766699****************************************99*****************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+++le+L++k+gE +aVn+ ++ +llde+v+++s+rd+vLkl+++++P+v+ + ++n++ F++rf e l +ys+lfd+ +++l r++ Csa05g035190.1 521 ENIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIRKIKPDVFMPAILSGSYNAPFFVTRFREVLFHYSSLFDMCDTTLTRDDPM 615 *********************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll+++ + +++ v+++ ++l++gWk+r ++ Csa05g035190.1 616 RVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLDKDLVQKLKLLVENGYkTKEFDVDQDCNWLLQGWKGRIVYL 704 *************************************************************9988999*****************9985 PP | |||||||
2 | GRAS | 346.6 | 4.1e-106 | 924 | 1302 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalklfsevsPil 91 ++lL+ cA+a+s+gd++ a lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ + ++ +ts+ + +++l+a++++ sP++ Csa05g035190.1 924 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLQGSTGSMIQNYyNAITTSSLKetATDTLKAYRVYLSSSPFV 1016 6799*************************************************966555444323333333223499**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 ++ ++ ++Il+a ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g +e++eetg+rLa+++++++vpfe+++++ Csa05g035190.1 1017 TLMYFFSFRMILDASIDANVLHIVDFGILYGFQWPMFIQYISGRKDAPKKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPFEYKAIA 1109 ************************************************************99*****************************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++++e++++++L+++p+E+laV l+l++l de++s e+ +rd+vLkl+++++P+v++++ + + n++ F rf ea+++ysalfd+++++ Csa05g035190.1 1110 SQHWEKIRIQDLDIRPNEVLAVTAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDST 1202 99**************************************99*************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366 lpr++eeri Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGF++ +++ + +++ + l+k + + + v+e+s++l++gWk+r+ Csa05g035190.1 1203 LPRDNEERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKQVKPELVEKFREKLKKWGyHKDFVVDENSKWLLQGWKGRT 1295 **********************************************************************99999****************** PP GRAS 367 LvsvSaW 373 L++ S+W Csa05g035190.1 1296 LYASSCW 1302 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.234 | 309 | 688 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-107 | 335 | 704 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 60.819 | 897 | 1282 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-103 | 924 | 1302 | IPR005202 | Transcription factor GRAS |
Pfam | PF05701 | 4.5E-244 | 1442 | 2001 | IPR008545 | WEB family |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2116 aa Download sequence Send to blast |
MGSYSAGFPG SLDWFDFPAL GNGLYLNDQP LLDTGSVPPL PPEPPSYSQQ NLASADAEFS 60 DSVLKYISQV LMEEDIEDKP CMFHDALSLQ AAEKSLYEAL GEKYPEDDAS HPMSITTTRP 120 AHLVSSPGGS SYTSSITTTS SDSQWSFDCL ENNRPSSWLQ TPIPNNFVFQ STSMRSSPSP 180 QSVVGGGNAV FVSSFSNDLV SNMFNDKEME LQFKKGMEEA SKFLPKSSQL VIDIPALGSK 240 GKDNSVPYRM TGKKSQLRED EDSDEERSKK QAAVYVDESE LTEMFNKVLI FGEPMEPPVC 300 ILQESFQKEP EKASSVSKSH KGEKPAANDK ETPDLRTMLV SCAQAVSIND RRTADDLLTR 360 IRQHSSSYGD GTERLAHYFA NSLEARLAGI GTQVYTALSS KKTSVSDMLQ AYQTYISVCP 420 FKKIAIIFAN HSIMRLASTA NAKTIHIIDF GISYGFQWPS LIHRLAWRRG SSCKLRITGI 480 ELPQRGFRPA EGVIETGHRL AKYCQKFNIP FEYNAIAQKW ENIKLEDLKL KEGEFVAVNS 540 LFRFRNLLDE TVAVHSPRDA VLKLIRKIKP DVFMPAILSG SYNAPFFVTR FREVLFHYSS 600 LFDMCDTTLT RDDPMRVMFE KEFYGREIMN VVACEGTERV ERPESYKQWQ ARAMRAGFRQ 660 IPLDKDLVQK LKLLVENGYK TKEFDVDQDC NWLLQGWKGR IVYLADPVEE DQYTLLKYVS 720 EILMEESNGD YKQSMFYDSL ALRKTEEMLQ QVITDSQNQS FSSDSIITTN SSSCPVGDAS 780 GSIVESADLR ISPAVVKSMF SDADSALQFK KGVEEASKFL PNSDQWLIKP ERFDLGLDPL 840 RVKRNHEREV IDFEEVRNSK QFATNVEDGK ITELFDKVLL LDSECDPPTL LDSKIQEIRS 900 SNKQGVKGKK EKKKKKKSQV VDFRTLLTLC AQAISTGDKT TALDLLMQIR QQSSPIGDAG 960 QRLAHCFANA LEARLQGSTG SMIQNYYNAI TTSSLKETAT DTLKAYRVYL SSSPFVTLMY 1020 FFSFRMILDA SIDANVLHIV DFGILYGFQW PMFIQYISGR KDAPKKLRIT GIELPQRGFR 1080 PAERIEETGR RLAEYCKRFN VPFEYKAIAS QHWEKIRIQD LDIRPNEVLA VTAGLRLKNL 1140 QDETGSEENC PRDAVLKLIR NMNPNVFIHS IVNGSFNAPF FISRFKEAVY HYSALFDMFD 1200 STLPRDNEER IRFEREFYGR EAMNVIACEE ADRVERPETY RQWQVRMVRA GFRQKQVKPE 1260 LVEKFREKLK KWGYHKDFVV DENSKWLLQG WKGRTLYASS CWNFSTSSPR SSSSTHPPPR 1320 RMEDLKNPTD SGDIVSDNAA TLNPDLVESA STRESNLQQS VSKVDDNIPQ SQTDNEDSVS 1380 ASDAATAAVL TEKDISSTTT TVEEQVSELN EIGLPNVKTL VGTATNDGSP TTGTPKKVDS 1440 HRGIIDNAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL IEEELKKIHD EIPEYKTHSE 1500 TAEAAKLKVL KELESTKRLI EQLKLNLEKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS 1560 VAAKAQLEVA KARHNGAVTE LCSVKDELET LHKEYDALVQ DKDVAVKKVE EATLASKEVE 1620 KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEDELQKLN 1680 QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSSTTNSDPS TDLHTAVASA 1740 KKELEEVNAN IEKAAAEVNC LKLASSSLQL ELEKEKSALA SIKQREGMAS IAVASLEAEI 1800 ERTRSEIASV QSKEKEGRDK MVELPKQLQQ AAEEADEAKS LAEVAREELR KAKEDSDQAK 1860 AGASTMESRL FAAQKEIEAA KASERLALAA IKALEESEST TLKENAPQSV TLSLEEYYEL 1920 SKRAHEAEEL ANARVAAAVS RIEEAKETET RSLEKLEEVN RDMDARKKAL KEATEKAEKA 1980 KEGKLGVEQE LRKWRAEHEQ KRKAGGDGVN NTEKSHQRDS SFEGGGNELS KLEKSSPEEA 2040 AVYASSPSDS YGTEDNVSET NQSPQTKSGK KKKKLSFPRF FIPTSVRTER MIEEAEYKAR 2100 WGATEKSTYL DGVDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-44 | 339 | 1302 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 908 | 916 | KKEKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g035190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005315 | 0.0 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639734.1 | 0.0 | scarecrow-like protein 33 isoform X4 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | D7LKB7 | 0.0 | D7LKB7_ARALL; Scarecrow transcription factor family protein | ||||
STRING | scaffold_401365.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |