PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g035190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 2116aa    MW: 237548 Da    PI: 5.2219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g035190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.5e-1103357041369
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts   +s+ l+a++++  v+P+ k++ 
  Csa05g035190.1 335 LRTMLVSCAQAVSINDRRTADDLLTRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---VSDMLQAYQTYISVCPFKKIAI 426
                     5789***************************************************************999...********************** PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     + aN+ I++ ++++  +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak+++++++pfe+n+ +a+++
  Csa05g035190.1 427 IFANHSIMRLASTAnaKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNIPFEYNA-IAQKW 520
                     *******99877766699****************************************99*****************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     e+++le+L++k+gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v+  +    ++n++ F++rf e l +ys+lfd+ +++l r++  
  Csa05g035190.1 521 ENIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIRKIKPDVFMPAILSGSYNAPFFVTRFREVLFHYSSLFDMCDTTLTRDDPM 615
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll+++ +  +++ v+++ ++l++gWk+r ++ 
  Csa05g035190.1 616 RVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLDKDLVQKLKLLVENGYkTKEFDVDQDCNWLLQGWKGRIVYL 704
                     *************************************************************9988999*****************9985 PP

2GRAS346.64.1e-10692413022373
            GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalklfsevsPil 91  
                      ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ +   ++ +ts+ +   +++l+a++++   sP++
  Csa05g035190.1  924 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLQGSTGSMIQNYyNAITTSSLKetATDTLKAYRVYLSSSPFV 1016
                      6799*************************************************966555444323333333223499**************** PP

            GRAS   92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 
                      ++ ++   ++Il+a   ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++
  Csa05g035190.1 1017 TLMYFFSFRMILDASIDANVLHIVDFGILYGFQWPMFIQYISGRKDAPKKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPFEYKAIA 1109
                      ************************************************************99*****************************99 PP

            GRAS  183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 
                      ++++e++++++L+++p+E+laV   l+l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysalfd+++++
  Csa05g035190.1 1110 SQHWEKIRIQDLDIRPNEVLAVTAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDST 1202
                      99**************************************99*************************************************** PP

            GRAS  275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366 
                      lpr++eeri  Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGF++ +++ + +++ +  l+k +  + + v+e+s++l++gWk+r+
  Csa05g035190.1 1203 LPRDNEERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKQVKPELVEKFREKLKKWGyHKDFVVDENSKWLLQGWKGRT 1295
                      **********************************************************************99999****************** PP

            GRAS  367 LvsvSaW 373 
                      L++ S+W
  Csa05g035190.1 1296 LYASSCW 1302
                      ******* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.234309688IPR005202Transcription factor GRAS
PfamPF035142.6E-107335704IPR005202Transcription factor GRAS
PROSITE profilePS5098560.8198971282IPR005202Transcription factor GRAS
PfamPF035141.4E-1039241302IPR005202Transcription factor GRAS
PfamPF057014.5E-24414422001IPR008545WEB family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 2116 aa     Download sequence    Send to blast
MGSYSAGFPG SLDWFDFPAL GNGLYLNDQP LLDTGSVPPL PPEPPSYSQQ NLASADAEFS  60
DSVLKYISQV LMEEDIEDKP CMFHDALSLQ AAEKSLYEAL GEKYPEDDAS HPMSITTTRP  120
AHLVSSPGGS SYTSSITTTS SDSQWSFDCL ENNRPSSWLQ TPIPNNFVFQ STSMRSSPSP  180
QSVVGGGNAV FVSSFSNDLV SNMFNDKEME LQFKKGMEEA SKFLPKSSQL VIDIPALGSK  240
GKDNSVPYRM TGKKSQLRED EDSDEERSKK QAAVYVDESE LTEMFNKVLI FGEPMEPPVC  300
ILQESFQKEP EKASSVSKSH KGEKPAANDK ETPDLRTMLV SCAQAVSIND RRTADDLLTR  360
IRQHSSSYGD GTERLAHYFA NSLEARLAGI GTQVYTALSS KKTSVSDMLQ AYQTYISVCP  420
FKKIAIIFAN HSIMRLASTA NAKTIHIIDF GISYGFQWPS LIHRLAWRRG SSCKLRITGI  480
ELPQRGFRPA EGVIETGHRL AKYCQKFNIP FEYNAIAQKW ENIKLEDLKL KEGEFVAVNS  540
LFRFRNLLDE TVAVHSPRDA VLKLIRKIKP DVFMPAILSG SYNAPFFVTR FREVLFHYSS  600
LFDMCDTTLT RDDPMRVMFE KEFYGREIMN VVACEGTERV ERPESYKQWQ ARAMRAGFRQ  660
IPLDKDLVQK LKLLVENGYK TKEFDVDQDC NWLLQGWKGR IVYLADPVEE DQYTLLKYVS  720
EILMEESNGD YKQSMFYDSL ALRKTEEMLQ QVITDSQNQS FSSDSIITTN SSSCPVGDAS  780
GSIVESADLR ISPAVVKSMF SDADSALQFK KGVEEASKFL PNSDQWLIKP ERFDLGLDPL  840
RVKRNHEREV IDFEEVRNSK QFATNVEDGK ITELFDKVLL LDSECDPPTL LDSKIQEIRS  900
SNKQGVKGKK EKKKKKKSQV VDFRTLLTLC AQAISTGDKT TALDLLMQIR QQSSPIGDAG  960
QRLAHCFANA LEARLQGSTG SMIQNYYNAI TTSSLKETAT DTLKAYRVYL SSSPFVTLMY  1020
FFSFRMILDA SIDANVLHIV DFGILYGFQW PMFIQYISGR KDAPKKLRIT GIELPQRGFR  1080
PAERIEETGR RLAEYCKRFN VPFEYKAIAS QHWEKIRIQD LDIRPNEVLA VTAGLRLKNL  1140
QDETGSEENC PRDAVLKLIR NMNPNVFIHS IVNGSFNAPF FISRFKEAVY HYSALFDMFD  1200
STLPRDNEER IRFEREFYGR EAMNVIACEE ADRVERPETY RQWQVRMVRA GFRQKQVKPE  1260
LVEKFREKLK KWGYHKDFVV DENSKWLLQG WKGRTLYASS CWNFSTSSPR SSSSTHPPPR  1320
RMEDLKNPTD SGDIVSDNAA TLNPDLVESA STRESNLQQS VSKVDDNIPQ SQTDNEDSVS  1380
ASDAATAAVL TEKDISSTTT TVEEQVSELN EIGLPNVKTL VGTATNDGSP TTGTPKKVDS  1440
HRGIIDNAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL IEEELKKIHD EIPEYKTHSE  1500
TAEAAKLKVL KELESTKRLI EQLKLNLEKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS  1560
VAAKAQLEVA KARHNGAVTE LCSVKDELET LHKEYDALVQ DKDVAVKKVE EATLASKEVE  1620
KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEDELQKLN  1680
QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSSTTNSDPS TDLHTAVASA  1740
KKELEEVNAN IEKAAAEVNC LKLASSSLQL ELEKEKSALA SIKQREGMAS IAVASLEAEI  1800
ERTRSEIASV QSKEKEGRDK MVELPKQLQQ AAEEADEAKS LAEVAREELR KAKEDSDQAK  1860
AGASTMESRL FAAQKEIEAA KASERLALAA IKALEESEST TLKENAPQSV TLSLEEYYEL  1920
SKRAHEAEEL ANARVAAAVS RIEEAKETET RSLEKLEEVN RDMDARKKAL KEATEKAEKA  1980
KEGKLGVEQE LRKWRAEHEQ KRKAGGDGVN NTEKSHQRDS SFEGGGNELS KLEKSSPEEA  2040
AVYASSPSDS YGTEDNVSET NQSPQTKSGK KKKKLSFPRF FIPTSVRTER MIEEAEYKAR  2100
WGATEKSTYL DGVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4433913028374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1908916KKEKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g035190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639734.10.0scarecrow-like protein 33 isoform X4
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLD7LKB70.0D7LKB7_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_401365.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein