PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g033460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23708.1 Da PI: 10.4169 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.8 | 1.3e-10 | 3 | 56 | 38 | 92 |
EEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 38 ledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 + ++g +Wev++ +k+++ y+++ + W++Fv++n L ++ + F+++g+++f Csa05g033460.1 3 ISVPWGSTWEVRI--SKNPRFYFMEkSEWEKFVRDNSLGRNELLCFTHKGKMNFGV 56 55689********..******6655388*******************999887744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 6.02E-8 | 1 | 58 | No hit | No description |
PROSITE profile | PS50863 | 11.166 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-8 | 2 | 56 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-10 | 3 | 59 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-9 | 6 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKISVPWGST WEVRISKNPR FYFMEKSEWE KFVRDNSLGR NELLCFTHKG KMNFGVNIMM 60 QIGKEMFQPP QARDFLASSS RFKTEQDDKT EEVVVSFEVG ARVPRTAAGS NGGGMYKRKL 120 NLGEKKAEES QKNTKRSERA FSIRRDHAGA SSSSVAGFSV VISKSYLIYL RILTSAAKDY 180 MPRVKSMVKI HHPDEKSSWN VVLFYNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g033460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491618.1 | 1e-111 | PREDICTED: B3 domain-containing protein REM23-like | ||||
Refseq | XP_010491619.1 | 1e-111 | PREDICTED: B3 domain-containing protein REM23-like | ||||
Swissprot | Q9LXE1 | 2e-69 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | R0FG33 | 9e-91 | R0FG33_9BRAS; Uncharacterized protein | ||||
STRING | XP_010491618.1 | 1e-110 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 9e-64 | B3 family protein |
Publications ? help Back to Top | |||
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