PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g030320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 39181.1 Da PI: 7.0315 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 1.9e-34 | 26 | 130 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg.. 88 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l +++++++ +++s + + ++++ Csa05g030320.1 26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAETTTSTHQepvttKPGSPNLVFQRENNDqt 120 589*********************************************************98777444442221122222222222221111122 PP TCP 89 .........k 89 + Csa05g030320.1 121 qfvaanldpE 130 2333334441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-31 | 27 | 102 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.297 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV 60 QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTSTHQEP VTTKPGSPNL VFQRENNDQT 120 QFVAANLDPE DAMKTFFPAT TTTSGGGTNM NFQNYPHHDD DNIVSRRTTT TPPNLSQDLG 180 LSLHPFQGNN NAVVVPETNS FTTTHFEPFG RISGWNHHDL TMTSSSSSEQ QEEERSNGGF 240 MVNHQHQPSM MTLLNTQQQQ VFLGVQQQQQ QRGTLQSSLF PHSFRSWDHQ TTPDHHHHHN 300 QVSPVMFASP SQFGSHGMMM MQGLSFPNTT RLLHGEEATQ PNSSSSQNSH L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-22 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-22 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g030320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005311 | 0.0 | AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence. | |||
GenBank | AY059945 | 0.0 | AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds. | |||
GenBank | BT001194 | 0.0 | BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510246.1 | 0.0 | PREDICTED: transcription factor TCP10 | ||||
Swissprot | O82277 | 0.0 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | D7LCY3 | 0.0 | D7LCY3_ARALL; Uncharacterized protein | ||||
STRING | XP_010510246.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14158 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-159 | TCP domain protein 10 |
Publications ? help Back to Top | |||
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