PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g030090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 434aa MW: 48985.6 Da PI: 4.8207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g030090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.3e-11	225	267	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR ++N+++e L+ l+P++ K + a+iL+ ++YI++L Csa05g030090.1 225 TTERERRCHLNERYEALKLLIPSP-----SKGDRASILQDGIDYINEL 267 67*******************9.....79************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.44E-11	216	272	No hit	No description
SuperFamily	SSF47459	9.95E-14	217	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-11	217	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.91	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-9	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	225	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MRMYEESSCF DPIPTVEAMM DNNGGGFCEA ETTFPVSHQY QPPLGSTTNS FNDDLKLPTM 60 EEFSVFPSVI SLPNSEPQNQ SNNNNHMINQ MIQDSNWGVS ADNSGFFMNT SDPNTTSTQQ 120 IPDLLSLLHL PRCSIPLPSS NLSDIMSDSC FAYDPLYHLN LPPQPPLIPA SDYSGFLLGI 180 DTNITTQRDD DSNVGNEINI DSGIIEFSKE IRRKGRGKRK NRPFTTERER RCHLNERYEA 240 LKLLIPSPSK GDRASILQDG IDYINELRRR VSELKYLVER KRCGGRHQNN EVDNNNNNLD 300 GQNDEDDVDD ENMNKKPESE VTDQCSSNNS LRCSWLQRKS KASEVDVRIV DDEVTIKVVQ 360 KKKINCLLLV SKVLDHLQLE LHHVAGGQIG EHYSFLFNTK IYEGSTIYAS AIANRVIEVV 420 DKHYMASLPI NNY*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MRMYEESSCF DPIPTVEAMM DNNGGGFCEA ETTFPVSHQY QPPLGSTTNS FNDDLKLPTM  60
EEFSVFPSVI SLPNSEPQNQ SNNNNHMINQ MIQDSNWGVS ADNSGFFMNT SDPNTTSTQQ  120
IPDLLSLLHL PRCSIPLPSS NLSDIMSDSC FAYDPLYHLN LPPQPPLIPA SDYSGFLLGI  180
DTNITTQRDD DSNVGNEINI DSGIIEFSKE IRRKGRGKRK NRPFTTERER RCHLNERYEA  240
LKLLIPSPSK GDRASILQDG IDYINELRRR VSELKYLVER KRCGGRHQNN EVDNNNNNLD  300
GQNDEDDVDD ENMNKKPESE VTDQCSSNNS LRCSWLQRKS KASEVDVRIV DDEVTIKVVQ  360
KKKINCLLLV SKVLDHLQLE LHHVAGGQIG EHYSFLFNTK IYEGSTIYAS AIANRVIEVV  420
DKHYMASLPI NNY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g030090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ519809	0.0	AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBank	AK118441	0.0	AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBank	BT009675	0.0	BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510224.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_019101387.1	0.0	PREDICTED: transcription factor bHLH91-like
Swissprot	Q8GX46	0.0	BH091_ARATH; Transcription factor bHLH91
TrEMBL	R0HPE8	0.0	R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010510224.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]