PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g030010.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 736aa MW: 81316.8 Da PI: 6.1084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g030010.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00064	571	608	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Csa05g030010.2 571 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 608 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.0E-32	6	163	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.97E-4	552	609	No hit	No description
PROSITE profile	PS50888	11.28	558	607	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-4	571	627	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-5	571	626	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MGSSSQEILR SFCSNTDWNY AVFWKLNHRG SRMVLTLEDA YYDSHGINNS LEVKDSSVIP 60 KNMHGVHDPL GLAVAKMSYH VYSLGEGIVG QVAVSGEHQW LFPEYYDNCL SEFEFHNVWE 120 SQISAGIKTI LVVAVGPCGV VQLGSLRKVN EDVNLVNHIR QIFLALGDPL ADHAANLMQC 180 NMNNSLCLPK IPSESLHAKA FPDCSGEVDK AMDVDESNIL TQYKTRRLDS LPYDTPLSSL 240 LLENAAQVVG GREVVQGSTC GSYSGVTFGF PTDLVDTKHE NQIGTNIISD APHVGMTSGC 300 KDRRGLDPNL QLYMKNHVLK NTSSSALSIE AERMITGQSY PGLDSTIHAS SRTEKESSYQ 360 NEVFQLSENH GNKYLKETER MLGKKCESSR FDALISPGYT FAGSELLEAL GSSFKQTSTG 420 QEELLKSEHR SIIRPTDDMS HSQLTFDSGP ENLLDAVVAN VCQSDGNARD DMLSSRSGQS 480 LLTNMEVAEP SGQKKHNVVN PVDSTMNHLP LVEVDTQQNS SDICGAFSSI GFSSTYPSSS 540 SDQFQTSLDI PKKNKKRAKP GESSRPRPRD RQLIQDRIKE LRELVPNGSK CSIDSLLERT 600 IKHMLFLQNV TKHADKLSKS AKTKMQQKET GMQGSSCAVE VGGHLQVCSI IVENLNKQGM 660 VLIEMLCEEC SHFLEIANVI RSLDLVILRG ITETQGEKTW ICFVTESQNS KVMQRMDILW 720 SLVQIFQPKT NNAKQ*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MGSSSQEILR SFCSNTDWNY AVFWKLNHRG SRMVLTLEDA YYDSHGINNS LEVKDSSVIP  60
KNMHGVHDPL GLAVAKMSYH VYSLGEGIVG QVAVSGEHQW LFPEYYDNCL SEFEFHNVWE  120
SQISAGIKTI LVVAVGPCGV VQLGSLRKVN EDVNLVNHIR QIFLALGDPL ADHAANLMQC  180
NMNNSLCLPK IPSESLHAKA FPDCSGEVDK AMDVDESNIL TQYKTRRLDS LPYDTPLSSL  240
LLENAAQVVG GREVVQGSTC GSYSGVTFGF PTDLVDTKHE NQIGTNIISD APHVGMTSGC  300
KDRRGLDPNL QLYMKNHVLK NTSSSALSIE AERMITGQSY PGLDSTIHAS SRTEKESSYQ  360
NEVFQLSENH GNKYLKETER MLGKKCESSR FDALISPGYT FAGSELLEAL GSSFKQTSTG  420
QEELLKSEHR SIIRPTDDMS HSQLTFDSGP ENLLDAVVAN VCQSDGNARD DMLSSRSGQS  480
LLTNMEVAEP SGQKKHNVVN PVDSTMNHLP LVEVDTQQNS SDICGAFSSI GFSSTYPSSS  540
SDQFQTSLDI PKKNKKRAKP GESSRPRPRD RQLIQDRIKE LRELVPNGSK CSIDSLLERT  600
IKHMLFLQNV TKHADKLSKS AKTKMQQKET GMQGSSCAVE VGGHLQVCSI IVENLNKQGM  660
VLIEMLCEEC SHFLEIANVI RSLDLVILRG ITETQGEKTW ICFVTESQNS KVMQRMDILW  720
SLVQIFQPKT NNAKQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g030010.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY954808	0.0	AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510215.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	R0HM95	0.0	R0HM95_9BRAS; Uncharacterized protein
STRING	XP_010510217.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]