PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g030010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 778aa MW: 86140.4 Da PI: 5.847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.2 | 0.00068 | 571 | 608 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Csa05g030010.1 571 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 608 67799************55......5566667777777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.2E-32 | 6 | 163 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00107 | 552 | 609 | No hit | No description |
PROSITE profile | PS50888 | 11.28 | 558 | 607 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-5 | 571 | 626 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-4 | 571 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MGSSSQEILR SFCSNTDWNY AVFWKLNHRG SRMVLTLEDA YYDSHGINNS LEVKDSSVIP 60 KNMHGVHDPL GLAVAKMSYH VYSLGEGIVG QVAVSGEHQW LFPEYYDNCL SEFEFHNVWE 120 SQISAGIKTI LVVAVGPCGV VQLGSLRKVN EDVNLVNHIR QIFLALGDPL ADHAANLMQC 180 NMNNSLCLPK IPSESLHAKA FPDCSGEVDK AMDVDESNIL TQYKTRRLDS LPYDTPLSSL 240 LLENAAQVVG GREVVQGSTC GSYSGVTFGF PTDLVDTKHE NQIGTNIISD APHVGMTSGC 300 KDRRGLDPNL QLYMKNHVLK NTSSSALSIE AERMITGQSY PGLDSTIHAS SRTEKESSYQ 360 NEVFQLSENH GNKYLKETER MLGKKCESSR FDALISPGYT FAGSELLEAL GSSFKQTSTG 420 QEELLKSEHR SIIRPTDDMS HSQLTFDSGP ENLLDAVVAN VCQSDGNARD DMLSSRSGQS 480 LLTNMEVAEP SGQKKHNVVN PVDSTMNHLP LVEVDTQQNS SDICGAFSSI GFSSTYPSSS 540 SDQFQTSLDI PKKNKKRAKP GESSRPRPRD RQLIQDRIKE LRELVPNGSK CSIDSLLERT 600 IKHMLFLQNV TKHADKLSKS AKTKMQQKET GMQGSSCAVE VGGHLQVCSI IVENLNKQGM 660 VLIEMLCEEC SHFLEIANVI RSLDLVILRG ITETQGEKTW ICFVTEMLCE ECSHFLEIAN 720 VIRSLDLVIL RGITETQGEK TWICFVTESQ NSKVMQRMDI LWSLVQIFQP KTNNAKQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate root development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g030010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY954808 | 0.0 | AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510216.1 | 0.0 | PREDICTED: transcription factor bHLH155 isoform X2 | ||||
Swissprot | Q58G01 | 0.0 | LHWL3_ARATH; Transcription factor bHLH155 | ||||
TrEMBL | R0HM95 | 0.0 | R0HM95_9BRAS; Uncharacterized protein | ||||
STRING | XP_010510217.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2083 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.3 | 0.0 | conserved peptide upstream open reading frame 7 |
Publications ? help Back to Top | |||
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