PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa05g029850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 384aa MW: 42788.4 Da PI: 6.2505 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.9 | 1.4e-10 | 202 | 260 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Csa05g029850.1 202 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 260 9********************************************99998887777665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-15 | 198 | 262 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 200 | 263 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.97E-10 | 202 | 253 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-11 | 202 | 256 | No hit | No description |
Pfam | PF00170 | 6.5E-9 | 202 | 254 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.01E-22 | 203 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MDKEKSPAPC GGGLPPPSPS GRCSAFSDSG PSGHGSDANR MSHDISRMLD NPPKKIGHRR 60 AHSEILTLPD DLSFDSDLGV VGNAADGPSF SDDTDEDLLS MYLDMDKFNS SATSSAQVGE 120 PSGGTAWKNE SMMQTGSTSN PQNTLNSFGE RPRIRHQHSQ SMDGSMNINE MLMSGNEDDS 180 VIDAKKSMSA TKLAELALID PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT 240 TLSAQLTLLQ RDTNGLTVEN NELKLRLQTM EQQVHLQDEL NEALKEEIQH LKVLTGQVAP 300 SALNYGSFGS NQQFYSNNQS MQTILAAQQF QQLQIHSQKQ QQQQQQQYQF QQQQMQQLMQ 360 QRMQQQEQQN GVRLKPSQSQ KES* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa05g029850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK317087 | 0.0 | AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20. | |||
GenBank | AY057534 | 0.0 | AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds. | |||
GenBank | AY113058 | 0.0 | AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510204.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
Refseq | XP_010510205.1 | 0.0 | PREDICTED: probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 0.0 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | D7LDK3 | 0.0 | D7LDK3_ARALL; Uncharacterized protein | ||||
STRING | XP_010510204.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2445 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31370.5 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|