PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa05g024520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 733aa MW: 80694.1 Da PI: 5.2062 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 73 | 128 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k ++++++q++e+e++F+++++p+ ++r++L ++lgL +q+k+WFqN+R++ k Csa05g024520.1 73 RKKYHRHNQYQIQEMEAFFKECPHPDDKQRKDLGRQLGLAPAQIKFWFQNKRTQNK 128 79999************************************************998 PP | |||||||
2 | START | 169.9 | 1.7e-53 | 257 | 476 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 a a++el+++a+++ep+W+ +n de+ ++f ++ + +++ea+r++++v m+++ +ve l++ + W++++ +a t+e Csa05g024520.1 257 AIGAMEELMLMAQVDEPLWMGGFngtsLALNLDEYARTFRKGLGprlsgFRTEASRETALVAMNPTGVVEMLMQAN-LWSTMFVgmvgRAITHEN 350 6779****************8777776789*********88776********************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 + ++ galq m+ae+q+lsplv+ R+++fvRy+rq+g+ w++vdvS+d+ ++ ++++++pSg+li++++ng+skvtwvehv++ Csa05g024520.1 351 LLTDtagnfnGALQIMSAEYQVLSPLVStRESYFVRYCRQQGENLWAVVDVSIDHLFPNIH----MKCRRRPSGCLIQETPNGYSKVTWVEHVEV 441 ********************************************************99975....999*************************** PP -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++r +++++++++sg+a++a++wvatl+rqce+ Csa05g024520.1 442 DDREAnQNIFKHFISSGQAFAANRWVATLERQCER 476 ***999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 52 | 128 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.65E-18 | 65 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-17 | 72 | 134 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.9E-17 | 73 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-17 | 73 | 131 | No hit | No description |
PROSITE profile | PS50848 | 36.512 | 246 | 479 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.61E-30 | 248 | 478 | No hit | No description |
CDD | cd08875 | 4.65E-111 | 252 | 475 | No hit | No description |
SMART | SM00234 | 1.7E-43 | 255 | 476 | IPR002913 | START domain |
Pfam | PF01852 | 6.8E-45 | 259 | 476 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.0E-5 | 357 | 442 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.32E-14 | 498 | 689 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 733 aa Download sequence Send to blast |
MSEPNMVPVD NNGDNDNNEN NNMNNTDVGL YNTNGGADAG VEADAGVGAG TEAEESDSRE 60 EEMGSDQGPS RKRKKYHRHN QYQIQEMEAF FKECPHPDDK QRKDLGRQLG LAPAQIKFWF 120 QNKRTQNKNQ QERCENTELR SLNTMLKSEN ERFREAVYLA LCPKCGGKTA IGEMSFEEHH 180 LRIVNARLKE EINELTALAV RFSSKSVVSN PVMSPRPSNR PPTFEFEAGS SSGTGGNLSR 240 EITGPADADS RMIMGLAIGA MEELMLMAQV DEPLWMGGFN GTSLALNLDE YARTFRKGLG 300 PRLSGFRTEA SRETALVAMN PTGVVEMLMQ ANLWSTMFVG MVGRAITHEN LLTDTAGNFN 360 GALQIMSAEY QVLSPLVSTR ESYFVRYCRQ QGENLWAVVD VSIDHLFPNI HMKCRRRPSG 420 CLIQETPNGY SKVTWVEHVE VDDREANQNI FKHFISSGQA FAANRWVATL ERQCERIASI 480 MTTDFRSVDS PDHLVLTDHG KMSILKLAER VSRNFFVGLT SSMGTTFSGA GGDDIRVMTM 540 KNINDPGRPP GVVISAATSF WVPAPPNIVF DSLRDVDHRD SWDVLCGGGV VVHKISEIAN 600 GRDSRNCATL LRNAIPCEKN MMIIQETSTD PTASFVVYAP VDTASIEGVL SEGQDPDYVP 660 LLPSGIAILP DGMGDEHGGS LLTVSFQMLV EEVHMGKLSI TSVATAETLI RTTVMKIKAL 720 FPFQIATPSL GK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 70 | 74 | RKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa05g024520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510028.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG3-like | ||||
Swissprot | Q9ZV65 | 0.0 | HDG3_ARATH; Homeobox-leucine zipper protein HDG3 | ||||
TrEMBL | A0A178VYN2 | 0.0 | A0A178VYN2_ARATH; HDG3 | ||||
STRING | XP_010510028.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32370.1 | 0.0 | homeodomain GLABROUS 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|