PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g024520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 733aa    MW: 80694.1 Da    PI: 5.2062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g024520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1973128156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k ++++++q++e+e++F+++++p+ ++r++L ++lgL  +q+k+WFqN+R++ k
  Csa05g024520.1  73 RKKYHRHNQYQIQEMEAFFKECPHPDDKQRKDLGRQLGLAPAQIKFWFQNKRTQNK 128
                     79999************************************************998 PP

2START169.91.7e-532574763206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a++el+++a+++ep+W+         +n de+ ++f ++ +     +++ea+r++++v m+++ +ve l++ +  W++++     +a t+e 
  Csa05g024520.1 257 AIGAMEELMLMAQVDEPLWMGGFngtsLALNLDEYARTFRKGLGprlsgFRTEASRETALVAMNPTGVVEMLMQAN-LWSTMFVgmvgRAITHEN 350
                     6779****************8777776789*********88776********************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     + ++      galq m+ae+q+lsplv+ R+++fvRy+rq+g+  w++vdvS+d+  ++      ++++++pSg+li++++ng+skvtwvehv++
  Csa05g024520.1 351 LLTDtagnfnGALQIMSAEYQVLSPLVStRESYFVRYCRQQGENLWAVVDVSIDHLFPNIH----MKCRRRPSGCLIQETPNGYSKVTWVEHVEV 441
                     ********************************************************99975....999*************************** PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++r   +++++++++sg+a++a++wvatl+rqce+
  Csa05g024520.1 442 DDREAnQNIFKHFISSGQAFAANRWVATLERQCER 476
                     ***999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-2052128IPR009057Homeodomain-like
SuperFamilySSF466892.65E-1865134IPR009057Homeodomain-like
PROSITE profilePS5007116.55270130IPR001356Homeobox domain
SMARTSM003896.3E-1772134IPR001356Homeobox domain
PfamPF000468.9E-1773128IPR001356Homeobox domain
CDDcd000861.36E-1773131No hitNo description
PROSITE profilePS5084836.512246479IPR002913START domain
SuperFamilySSF559617.61E-30248478No hitNo description
CDDcd088754.65E-111252475No hitNo description
SMARTSM002341.7E-43255476IPR002913START domain
PfamPF018526.8E-45259476IPR002913START domain
Gene3DG3DSA:3.30.530.209.0E-5357442IPR023393START-like domain
SuperFamilySSF559614.32E-14498689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSEPNMVPVD NNGDNDNNEN NNMNNTDVGL YNTNGGADAG VEADAGVGAG TEAEESDSRE  60
EEMGSDQGPS RKRKKYHRHN QYQIQEMEAF FKECPHPDDK QRKDLGRQLG LAPAQIKFWF  120
QNKRTQNKNQ QERCENTELR SLNTMLKSEN ERFREAVYLA LCPKCGGKTA IGEMSFEEHH  180
LRIVNARLKE EINELTALAV RFSSKSVVSN PVMSPRPSNR PPTFEFEAGS SSGTGGNLSR  240
EITGPADADS RMIMGLAIGA MEELMLMAQV DEPLWMGGFN GTSLALNLDE YARTFRKGLG  300
PRLSGFRTEA SRETALVAMN PTGVVEMLMQ ANLWSTMFVG MVGRAITHEN LLTDTAGNFN  360
GALQIMSAEY QVLSPLVSTR ESYFVRYCRQ QGENLWAVVD VSIDHLFPNI HMKCRRRPSG  420
CLIQETPNGY SKVTWVEHVE VDDREANQNI FKHFISSGQA FAANRWVATL ERQCERIASI  480
MTTDFRSVDS PDHLVLTDHG KMSILKLAER VSRNFFVGLT SSMGTTFSGA GGDDIRVMTM  540
KNINDPGRPP GVVISAATSF WVPAPPNIVF DSLRDVDHRD SWDVLCGGGV VVHKISEIAN  600
GRDSRNCATL LRNAIPCEKN MMIIQETSTD PTASFVVYAP VDTASIEGVL SEGQDPDYVP  660
LLPSGIAILP DGMGDEHGGS LLTVSFQMLV EEVHMGKLSI TSVATAETLI RTTVMKIKAL  720
FPFQIATPSL GK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g024520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510028.10.0PREDICTED: homeobox-leucine zipper protein HDG3-like
SwissprotQ9ZV650.0HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBLA0A178VYN20.0A0A178VYN2_ARATH; HDG3
STRINGXP_010510028.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32370.10.0homeodomain GLABROUS 3
Publications ? help Back to Top
  1. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]