PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g022910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 430aa    MW: 47448.4 Da    PI: 6.1974
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g022910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-06846537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++e  + lfC+ ++  lC  C ++ H+       H
  Csa05g022910.1  8 ACDFCGERTAVLFCRADSAKLCLPCDQHVHSAnllskkH 46
                    6******99*******************99555555556 PP
2zf-B_box22.81.9e-074991339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     ++C+++++++++  C++++  lC++C    H +      H++
  Csa05g022910.1 49 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssasaHER 91
                    689************************9988844667777765 PP
3CCT63.46.8e-22384427144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R Rv+GrFvk++
  Csa05g022910.1 384 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVRGRFVKAT 427
                     899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-12451IPR000315B-box-type zinc finger
PROSITE profilePS501199.599451IPR000315B-box-type zinc finger
CDDcd000213.44E-9739No hitNo description
PROSITE profilePS501199.2144794IPR000315B-box-type zinc finger
CDDcd000213.34E-75191No hitNo description
SMARTSM003361.35294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.852384426IPR010402CCT domain
PfamPF062034.6E-16384426IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGSSTTVACD FCGERTAVLF CRADSAKLCL PCDQHVHSAN LLSKKHVRSQ ICDNCSKEPV  60
SVRCFTDNLV LCQECDWDVH GSCSSASAHE RSAVEGFSGC PSVSELAAVW GIDLEGKKKD  120
EDEGEGEEEE RLTDNFGMAL DSWVSGSNNI VQDLIVPYDM SMKKQSFSFG RSKQVVYRQL  180
EELLKSGFVS GCEGDGDGDG DGDGEGGGEI MVREGNNGGG SITHLSPTTS FTSLLLSAEY  240
QSSCGNAATQ FNASNHTIGH NNTQIWDFNL GKSRNPEEPS QFEPKDSTFT FNNVTHIKNE  300
TRPTNLKALR DSYQIQQDDS IRTNSIKGQE TSRSNNTPAA IHSHKSSNDS SDLHFPEHVV  360
IPSTKTTRLL VATNADLERM AQNRDNAMQR YKEKKKTRRY DKTIRYETRK ARAETRLRVR  420
GRFVKATDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g022910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509874.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X1
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLR0HT150.0R0HT15_9BRAS; Uncharacterized protein
STRINGXP_010509874.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]