PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g022840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 34843.2 Da PI: 8.0488 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.3 | 4.9e-29 | 41 | 134 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ Csa05g022840.1 41 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQLEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 134 8**********************97778888888******************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-13 | 41 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-5 | 41 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 41 | 107 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MALEQQLGLG VSAVDGGGGE NSSAPSNDGG DDGVKTARLP RWTRQEILVL IQGKRVAENR 60 VRRGRAAGMA LGSGQLEPKW ASVSSYCRRH GVNRGPVQCR KRWSNLAGDY KKIKEWESQV 120 KEETESYWVM RNDVRREKKL PGFFDKEVYD IVDGGVIPPP AVPTLSLGLA PASEEGLLSD 180 FDRLDKLNST PVPKSVPDVV DKEKQAACGA DQGRVKEKHP GGANVEGAST SQEERKRKRT 240 STGEREEKEE EEGETKKMQN QLIEILERNG QLLAAQLEVQ NLNLKLDREQ RKDHGDSLVA 300 VLNKLADAVT KIADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g022840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065364 | 0.0 | AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds. | |||
GenBank | AY096389 | 0.0 | AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509869.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 0.0 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | R0FXU4 | 0.0 | R0FXU4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010509869.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-170 | Trihelix family protein |
Publications ? help Back to Top | |||
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