PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g021640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 331aa    MW: 37055.1 Da    PI: 8.2108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g021640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-2170119356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g+
  Csa05g021640.1  70 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 119
                     9*******.**********9...3.35*************************997 PP
2AP266.94e-21185234356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g+
  Csa05g021640.1 185 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 234
                     9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1569119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3369127IPR001471AP2/ERF domain
SMARTSM003801.2E-3769132IPR001471AP2/ERF domain
PROSITE profilePS5103224.94869126IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2369128IPR016177DNA-binding domain
CDDcd000182.07E-3369128No hitNo description
PRINTSPR003676.0E-127081IPR001471AP2/ERF domain
PRINTSPR003676.0E-1292108IPR001471AP2/ERF domain
PfamPF008472.5E-15184234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-33184242IPR001471AP2/ERF domain
SMARTSM003801.2E-37184247IPR001471AP2/ERF domain
PROSITE profilePS5103224.948184241IPR001471AP2/ERF domain
CDDcd000182.07E-33184243No hitNo description
SuperFamilySSF541714.25E-23184243IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MHSGKSPLSP ESMAGNREEK EEALCRCSTL SESDVSAFVS ELTDQPIPPS MDQSSSLTLQ  60
EQSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD TAEEAALAYD KAAFEFRGHK  120
AKLNFPENIR INSTQLIYPS TATSHASIIV TPPPAIAPDM LLDQYGQFQS RNSDYEQSNS  180
RQRNYRGVRQ RPWGKWAAEI RDPNKAARVW LGTFDTAEEA ALAYDKAAFE FRGHKAKLNF  240
PENIRINSTQ LYPLSSTSHA SVIVTPPPAI APDMLLDQYG QFQSRNSDYG ANLSLTMSSS  300
SSSSLNHQGD RPNLEDDENM KNISIHKRRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2665250170ATERF1
3gcc_A5e-2665250170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g021640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364561e-168AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
GenBankBT0002361e-168BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413824.11e-122PREDICTED: ethylene-responsive transcription factor ERF112-like
SwissprotP930073e-91EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLR0G1F81e-111R0G1F8_9BRAS; Uncharacterized protein
STRINGXP_010513072.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-81ERF family protein