PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g020830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20050.6 Da PI: 7.3646 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.8 | 3.9e-20 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae+ +++fs+ gk + y Csa05g020830.1 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAEIGIVVFSPGGKPFSY 57 56778**********************************9996665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.88E-26 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.329 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AEIGIVVFSP GGKPFSYGKP 60 DLDSVAERFL REYDDDDDSD SGDEQGRGRT RPKLKKMSER LDKLNLEIEA EKKRGEKAQE 120 KLESAGDGRF KKSIEALTLE ELNEYKDKLE TVHDRIEGDA SRIQASSSLV ILSNDKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 84 | 1 | 83 | MEF2C |
5f28_B | 1e-17 | 1 | 84 | 1 | 83 | MEF2C |
5f28_C | 1e-17 | 1 | 84 | 1 | 83 | MEF2C |
5f28_D | 1e-17 | 1 | 84 | 1 | 83 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g020830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004077 | 1e-144 | AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence. | |||
GenBank | AC004481 | 1e-144 | AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence. | |||
GenBank | CP002685 | 1e-144 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ446598 | 1e-144 | DQ446598.1 Arabidopsis thaliana clone pENTR221-At2g34440 MADS-box family protein (At2g34440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509750.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 1e-98 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A178VU29 | 3e-96 | A0A178VU29_ARATH; AGL29 | ||||
STRING | XP_010509750.1 | 1e-125 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-94 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
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