PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g018500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 200aa    MW: 22191.9 Da    PI: 6.5315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g018500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-184796255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Csa05g018500.1 47 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 96
                    59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.57647104IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2147105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3247105IPR001471AP2/ERF domain
SMARTSM003801.1E-3947110IPR001471AP2/ERF domain
PfamPF008472.2E-114896IPR001471AP2/ERF domain
CDDcd000182.45E-3348106No hitNo description
PRINTSPR003672.0E-104859IPR001471AP2/ERF domain
PRINTSPR003672.0E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MERDDDCRRF QDSPAQKTER RRVKNYPKKK RSVKDDDEKV VVSKHPTFRG VRMRQWGKWV  60
SEIREPKKKS RIWLGTFSTA EMAARAHDVA ALAIKGGSAH LNFPELAYHL PRPASADPKD  120
IQAAAAAAAA AVAIDMEVET TSSPSPSPTV TETSSPGMTA ISDDAFSDLP DLLLDVNRKI  180
DGFWESFPDD EEPFLSQSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1735104272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g018500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509574.11e-145PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP31e-103ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLR0FYV11e-116R0FYV1_9BRAS; Uncharacterized protein
STRINGXP_010509574.11e-144(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-84ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]