PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g016990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 293aa    MW: 33337.5 Da    PI: 7.4296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g016990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
   Csa05g016990.1 14 RGPWSPEEDAKLKDYIEKQGTGgNWISLPHKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding42.31.8e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd +++ + +  G++ W+ Ia+++  gRt++++k++w++
   Csa05g016990.1  69 GDFTEEEDNIIYSLYASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.637962IPR017930Myb domain
SuperFamilySSF466892.66E-2711109IPR009057Homeodomain-like
SMARTSM007173.2E-111364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231569IPR009057Homeodomain-like
CDDcd001675.83E-81662No hitNo description
PROSITE profilePS5129422.06563117IPR017930Myb domain
SMARTSM007173.5E-1267115IPR001005SANT/Myb domain
PfamPF002491.4E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2470118IPR009057Homeodomain-like
CDDcd001675.81E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIS LPHKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FTEEEDNIIY SLYASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
MAPPPNHHLA SATPSSPSHY NMINTLLPYN PSISTNQLLT PHQGMMMTMM GQQQQLLYQA  180
DMGTLVNSPN RNNFIMSHQE DSQEQSTNKG IMLLSDVRSG SSTTSTVTRV KMEHRDHHHH  240
EELEDERSMS SAVIEDYGME EIKQLISSSC TSSSNSLWFD ENKTEDKFML YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g016990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195770.0AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509421.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL71e-157RAX2_ARATH; Transcription factor RAX2
TrEMBLR0HDJ31e-167R0HDJ3_9BRAS; Uncharacterized protein
STRINGXP_010509421.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-154MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]