PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g016790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 239aa    MW: 26174.5 Da    PI: 7.574
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g016790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.4e-5590184195
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++yre ++
  Csa05g016790.1  90 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLMRYREGDT 184
                     69*****************************************************************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-5288205IPR009072Histone-fold
SuperFamilySSF471135.09E-3993211IPR009072Histone-fold
PfamPF008083.9E-2796160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-21124142No hitNo description
PROSITE patternPS006850127143IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.2E-21143161No hitNo description
PRINTSPR006157.2E-21162180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
LISQIADVSL LSSFLKRPIN LSSPLAASLP QSLPPINDTS LFSHSRPFFE FISGFFFVWG  60
LEMTESQAKS PGGGGRHESG GDQSPRSLHV REQDRFLPIA NISRIMKRGL PANGKIAKDA  120
KEIVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEEYIE PLKLYLMRYR  180
EGDTKGSAKG GDANAKKDGQ SSQNGQFPQL PNQGSFSQGP YGNSQAQQHM MVPMPGTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4691181393NF-YB
4awl_B2e-4688181194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4688181194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g016790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172230.0AK317223.1 Arabidopsis thaliana AT2G37060 mRNA, partial cds, clone: RAFL22-38-O10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509397.11e-117PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_010509398.11e-117PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_010516951.11e-117PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_019101277.11e-117PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_020883881.11e-117nuclear transcription factor Y subunit B-8 isoform X1
SwissprotQ8VYK41e-113NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0D3B5C31e-115A0A0D3B5C3_BRAOL; Uncharacterized protein
TrEMBLD7LJN91e-115D7LJN9_ARALL; Uncharacterized protein
STRINGBostr.23794s0383.1.p1e-117(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-108nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]