PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g009390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SBP | ||||||||
Protein Properties | Length: 380aa MW: 41134.2 Da PI: 8.1641 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.1 | 3e-39 | 73 | 157 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +dl++ak y++rh+vC +hsk+p+v+v gleqrfCqqCs rfh+l efD ekrsCrrrLa+hnerrrk+q+ Csa05g009390.1 73 RCQVEGCGTDLTNAKGYYSRHRVCGMHSKTPKVIVGGLEQRFCQQCSrsesislRFHQLPEFDLEKRSCRRRLAGHNERRRKPQP 157 6*********************************************955555555***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.5E-32 | 66 | 142 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.974 | 71 | 155 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-37 | 72 | 159 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-28 | 74 | 154 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEMGSNSGPG LGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGVGSNRRV 60 RGGGSGQSGQ IPRCQVEGCG TDLTNAKGYY SRHRVCGMHS KTPKVIVGGL EQRFCQQCSR 120 SESISLRFHQ LPEFDLEKRS CRRRLAGHNE RRRKPQPASL SVLSSRYGRI APSLYGNADA 180 GMNGSFLGNQ DMGWTSTRTL DTRVIRRPVS APSWQINPMN VFSQGSVGGG GTSFSSPEIM 240 DTKLESYKGM GDSNCALSLL SNPHQPQANN NNNNNNTWRA SSGFCPMTVT MAQPPPAPSQ 300 HQYLNPPWVF KDDDNDMSPV LNLGRFTEPA DNCQISNGTT TMGDQFELSD HHHQSRRQYI 360 EDENTRAYDS SSHHNNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 63 | 154 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g009390.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY046007 | 0.0 | AY046007.1 Arabidopsis thaliana putative squamosa-promoter binding protein (At2g42200) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508605.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 0.0 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | R0HTJ6 | 0.0 | R0HTJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010508605.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 0.0 | squamosa promoter binding protein-like 9 |