PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa05g009180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 458aa MW: 51378.1 Da PI: 5.0221 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 424.4 | 1.7e-130 | 226 | 440 | 2 | 216 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 ppsaflgpkcalwdctrpa+gsew+ dycs+fhatlalne++pg tpvlrp+gi+lkd+ll++al+ak+qgk+vgip+cega+++k+pwnaaelf Csa05g009180.1 226 PPSAFLGPKCALWDCTRPAHGSEWYLDYCSNFHATLALNEDSPGATPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELF 320 7********************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvd 191 +l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqps+sfewhl+ey+ine+da+alyrle k+ + Csa05g009180.1 321 HLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPSGSFEWHLFEYQINESDACALYRLEKKVGN 415 *********************************************************************************************** PP VOZ 192 ekksakgkvskdsladlqkklgrlt 216 +kks+kgk+skd+ladlqkk+g+++ Csa05g009180.1 416 GKKSPKGKISKDPLADLQKKMGQFK 440 **********************986 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 458 aa Download sequence Send to blast |
MSNHPKMTCV SSAHQNLEEK LRELQEKFCH LQAARKEGRH GDLALLEAQI SQNLREWQAE 60 LTAPSPESSL LGEGISQFLE EFAEFAPLLK LDEEDDATST LKEHAAPKPE PEGFAQTLCP 120 PEWTSDHFSQ SLFNGNFSCG VEDAGNNTET HGQQLHYAFE GFDSSINTAP DFHDQKLSNL 180 DITSQYDYIC SEVRQELDNS PSIKLDSSEE IENFAEFTTP SSVRVPPSAF LGPKCALWDC 240 TRPAHGSEWY LDYCSNFHAT LALNEDSPGA TPVLRPGGIS LKDNLLIDAL RAKTQGKNVG 300 IPVCEGAVNT KCPWNAAELF HLELVEGETI REWLFFDKPR RAYDSGNRKQ RSLPDYSGRG 360 WHESRKQLMK EQEGQKRSYY MDPQPSGSFE WHLFEYQINE SDACALYRLE KKVGNGKKSP 420 KGKISKDPLA DLQKKMGQFK VASDKPSPQS NSRLLQQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00018 | PBM | Transfer from AT2G42400 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa05g009180.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB125257 | 0.0 | AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds. | |||
GenBank | AF361831 | 0.0 | AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds. | |||
GenBank | AY078048 | 0.0 | AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508578.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Refseq | XP_010508579.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Refseq | XP_010508580.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | R0FVW1 | 0.0 | R0FVW1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010508578.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|