PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g009170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 24837.1 Da PI: 8.4883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H Csa05g009170.1 50 YICSFCRREFRSAQALGGHMNVH 72 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.73E-6 | 47 | 76 | No hit | No description |
SMART | SM00355 | 0.0098 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.1E-6 | 50 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.97 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKRTHLASFS NRSTTQEEEE EEDTDADNRV IMNHYKNYEA GLIPWPPKNY ICSFCRREFR 60 SAQALGGHMN VHRRDRAKLR QIPSWLFELP QHHIPIANPN PNIRSSSSAS TTPAHLEPSL 120 TNQRSIPTPF PSAQFDLLDS TTTRYGGLMV DREKNKRNVC SRELKKGVID ACNSVRCEIS 180 RGDVMNQKDD QVMGLELGMS LRNPKQVLDL ELRLGYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 45 | 72 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 45 | 72 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g009170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493586 | 0.0 | AB493586.1 Arabidopsis thaliana At2g42410 gene for hypothetical protein, partial cds, clone: RAAt2g42410. | |||
GenBank | AC005956 | 0.0 | AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508577.1 | 1e-164 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
Swissprot | Q9SLB8 | 1e-131 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | D7LI58 | 1e-132 | D7LI58_ARALL; Predicted protein | ||||
STRING | XP_010508577.1 | 1e-163 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 1e-130 | zinc finger protein 11 |