PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g009150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 249aa    MW: 27687.3 Da    PI: 6.5544
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g009150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC k+Cv+apyf++eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP yG+v++i++lqqq+ +l++++
  Csa05g009150.1   7 PCGACKFLRRKCIKGCVFAPYFCHEQgASHFAAIHQVFGASNASKLLSHLPVEDRREAATTIYYEAQARRQDPTYGCVSHIFSLQQQVVNLQTQV 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     + lk++
  Csa05g009150.1 102 EILKQQ 107
                     *99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8756108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPVED  60
RREAATTIYY EAQARRQDPT YGCVSHIFSL QQQVVNLQTQ VEILKQQATQ SMMARDSPSI  120
EDSNYYRDNK PQHLQEPQDL HNHHHHTTSN YYQNGSLETE HNSDLKNIMT SCYHQNQTGT  180
RSFIGAGGDT TAASYYYNSS SGCSEEINLT NGEFSKYSEL DQHLNTFNQH LPGGGGNDLL  240
SASFEYTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431027105LOB family transfactor Ramosa2.1
5ly0_B2e-3431027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g009150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738480.0AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508574.10.0PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB61e-131LBD17_ARATH; LOB domain-containing protein 17
TrEMBLD7LI621e-131D7LI62_ARALL; Uncharacterized protein
STRINGXP_010508574.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-117LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]