PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g007310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 331aa    MW: 35919.6 Da    PI: 8.956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g007310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11244289655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Csa05g007310.1 244 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 289
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13241294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-11242293No hitNo description
Gene3DG3DSA:4.10.280.101.0E-11243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9244289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYPPNSSKSS GPDGVDADIN QYDSAAGATR DFSSLGSQTS HHPLPPPRQQ HHNPNVVGHY  60
ISGEPSSVGF DSGASSSSLF RHRSSPAGFY DQHLPTDPNG FSLGRPNGGY GGGGGGGGER  120
GPSRLKSELR FSGGSSSHQE HNSLPRISEV EAAAAAINGV ASSSMNFGND HTNNWDNSSS  180
HISFTIDQPG KRSKNSDFFT LETQFSMPQT SLEMARMENL MNIPEDSVPC RVRAKRGFAT  240
HPRSIAERER RTRISGKLKK LQELVPNMDK QTSYADMLDL AVEHIKGLQH QVEVRPYISI  300
YVVQSDIFSN GSKGINPLYT LRKCYNKAKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g007310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044501e-104AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026851e-104CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508466.10.0PREDICTED: transcription factor bHLH129-like
SwissprotQ9ZW811e-156BH129_ARATH; Transcription factor bHLH129
TrEMBLR0HDD90.0R0HDD9_9BRAS; Uncharacterized protein
STRINGXP_010508466.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.11e-136bHLH family protein