PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g006960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 926aa MW: 102707 Da PI: 5.2287

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g006960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	578	628	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa05g006960.1 578 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 628 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.597	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	580	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.09E-22	814	911	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-22	824	904	No hit	No description
PROSITE profile	PS51745	17.852	825	911	IPR000270	PB1 domain
SMART	SM00666	4.9E-21	825	907	IPR000270	PB1 domain
CDD	cd06407	3.64E-36	826	906	No hit	No description
Pfam	PF00564	1.4E-15	828	906	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MEDPFASREK GFGYQDMPTE QMDGFSTSFG SGVRSLISDD LLNSSSELMN FDSFAAWCNT 60 PSAADILFSQ YGLLNSQPMP FGAFHAADSP KATSLTRSFH DLETSYFGEE TSLVPEIDND 120 VLSGKRRRVN NNHKIGFPDV LNCTIPRSLS HSLDEKMLKA LSLFMESSGS GEGILAQVWT 180 PIKIGDQYVL STCDQAYLLD PRLSQYREVS RKFTFAAEAN QRSFPGLPGR VFISGVPEWT 240 SNVMYYKTDE YLRMKHAIDN EVRGSIAIPV LEASGTSCCA VMEFVTSKEK PNFDMEMDSV 300 CRALQAVNLR TTAIPRPQYL SRNQRDALAE IQDVLRAVSH AHKLPLALAW IPCRKDQSVR 360 VPRPNSGENY VLCIEETACY VNDMEMEGFV HACLEHCLRE KEGIVGKAFI SNQPFFSSDV 420 KAYDISEYPL VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPVSMKGS LEQQLLLDSL 480 SGTMQRICRT LRTVSEVVST KKEVIKPGFQ SGEMSNFPQT TCLANFQTTS LDSEYNSTRS 540 IFSGMSSDKD NGITVSQGIL EQDMSKARTL EKKKSTTEKN VSLSILQQHF SGSLKDAAKS 600 LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK YDSATGEFIA 660 VGPFIQKFDT QNGLLSHIND THARKSLEEM TDDTSFELQE AKFVDNAVKL EEDITMNHAS 720 TGSFMEVNAS GQPWDWMVEQ SGLNGSEGIK SVCNLSSLEI SDRMDPTIRC SGSIVEPNQS 780 MSCSISDSSN GSGAIMRGSS STSVEDWNQM RSHNNNSGGE SGSTMLIVKA TYREDTVRFK 840 FEPSAGCSQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMMV TESDLQECLE ILYGMGKQSV 900 KFMVRDLPPP IGSSAGSNGY LGTCL*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MEDPFASREK GFGYQDMPTE QMDGFSTSFG SGVRSLISDD LLNSSSELMN FDSFAAWCNT  60
PSAADILFSQ YGLLNSQPMP FGAFHAADSP KATSLTRSFH DLETSYFGEE TSLVPEIDND  120
VLSGKRRRVN NNHKIGFPDV LNCTIPRSLS HSLDEKMLKA LSLFMESSGS GEGILAQVWT  180
PIKIGDQYVL STCDQAYLLD PRLSQYREVS RKFTFAAEAN QRSFPGLPGR VFISGVPEWT  240
SNVMYYKTDE YLRMKHAIDN EVRGSIAIPV LEASGTSCCA VMEFVTSKEK PNFDMEMDSV  300
CRALQAVNLR TTAIPRPQYL SRNQRDALAE IQDVLRAVSH AHKLPLALAW IPCRKDQSVR  360
VPRPNSGENY VLCIEETACY VNDMEMEGFV HACLEHCLRE KEGIVGKAFI SNQPFFSSDV  420
KAYDISEYPL VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPVSMKGS LEQQLLLDSL  480
SGTMQRICRT LRTVSEVVST KKEVIKPGFQ SGEMSNFPQT TCLANFQTTS LDSEYNSTRS  540
IFSGMSSDKD NGITVSQGIL EQDMSKARTL EKKKSTTEKN VSLSILQQHF SGSLKDAAKS  600
LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK YDSATGEFIA  660
VGPFIQKFDT QNGLLSHIND THARKSLEEM TDDTSFELQE AKFVDNAVKL EEDITMNHAS  720
TGSFMEVNAS GQPWDWMVEQ SGLNGSEGIK SVCNLSSLEI SDRMDPTIRC SGSIVEPNQS  780
MSCSISDSSN GSGAIMRGSS STSVEDWNQM RSHNNNSGGE SGSTMLIVKA TYREDTVRFK  840
FEPSAGCSQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMMV TESDLQECLE ILYGMGKQSV  900
KFMVRDLPPP IGSSAGSNGY LGTCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g006960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508418.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_010508419.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_010508420.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010508418.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]