PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g005540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 391aa    MW: 42765.1 Da    PI: 9.4666
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g005540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.23.3e-2169160187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  Csa05g005540.1  69 CWSLEETVALIDGYRDKWYALNRGNLKANHWEEVAEAVgvscPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRMEA 160
                     7************************************9998889999***************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-1968161No hitNo description
PROSITE profilePS500906.20270130IPR017877Myb-like domain
SMARTSM005956.4E-1577166IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSDPDSPMNH DPIPDPSPVR IQSSPPSALV PPSLSSPAQD DASAEPVSVT DLKSASVPSK  60
NSRRLPPPCW SLEETVALID GYRDKWYALN RGNLKANHWE EVAEAVGVSC PDVTPKKTAV  120
QCRHKMEKLR KRYRTEIQRA RSVPVARFIS SWVHFKRMEA MENRPEIIKQ GNESGDDEDH  180
DDGNYTARYQ FKNGGGGGSV ARTTPRFFNR NGTAGSGSSS GGIRIRIPTG VSLAQPGPRF  240
AGKIDQKYTA SPSSNPRPAR GLGVGSSYSA RVGRVPEGGG GGGKRGREMM MKTEEDDGDG  300
NGNGNDPMVE IASAIKLLGD TMLRTEQTRM EMTREIEAMR METEMKRTKM ILESQQRIVE  360
AFAKTIAENN TEEEKMKKKA RRMAAADSLD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g005540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036721e-180AC003672.3 Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete sequence.
GenBankCP0026851e-180CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508260.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGXP_010508260.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-168Trihelix family protein