PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g004420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28228.3 Da PI: 6.5403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g Csa05g004420.1 118 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLRG 168 59*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.105 | 118 | 176 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 118 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-23 | 118 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-37 | 118 | 182 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-31 | 118 | 178 | No hit | No description |
PRINTS | PR00367 | 2.1E-13 | 119 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-13 | 119 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSGFNYSDSL INSSESVNNG VNSQQSQMYF RNPSFSNVIL NDNWSDLPLS VDDSQDMAIY 60 NTLRDAVSSG WTPVVPPPPV SSSPATTTDV VFVREEKKKQ PITTKASGSH APRQKGMQYR 120 GVRRRPWGKF AAEIRDPKKN GARVWLGTYE TPEDAAVAYD RAAFQLRGSK AKLNFPHLIG 180 SCKYEPVRIR PRRRSPDPSS VSEQLSPEQK MEEGEQSRFV VPELDFSVDQ FCFDGSLLID 240 QSECSSYSDN QT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-31 | 115 | 181 | 2 | 68 | ATERF1 |
3gcc_A | 1e-31 | 115 | 181 | 2 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g004420.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002388 | 1e-123 | AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence. | |||
GenBank | AF325089 | 1e-123 | AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds. | |||
GenBank | AF370540 | 1e-123 | AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds. | |||
GenBank | AY072471 | 1e-123 | AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds. | |||
GenBank | AY088387 | 1e-123 | AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence. | |||
GenBank | CP002685 | 1e-123 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508240.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 13-like isoform X1 | ||||
Swissprot | Q8L9K1 | 1e-132 | ERF99_ARATH; Ethylene-responsive transcription factor 13 | ||||
TrEMBL | R0HUP9 | 1e-134 | R0HUP9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010508240.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-103 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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