PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g004220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 265aa    MW: 29021.1 Da    PI: 8.2863
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g004220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18180214135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Csa05g004220.1 180 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 214
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-942264IPR016679Transcription factor, GATA, plant
SMARTSM004014.6E-15174224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.319174210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-13178212IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.04E-14178238No hitNo description
CDDcd002021.04E-13179226No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003207.3E-16180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDVYGLSSPD LLRIDDLLDF SNEDIFSASS NSGGSTAATS SSSFPPPQNP SYHHHHLPSS  60
ADHHSFLHDI CVPSDDAAHL EWLSQFVDDS FADFPANPLG GTMTSVKTET SFPGKPRSKR  120
SRAPAPFAGT WSPMPQESEQ QQLHNAAKFK PKKEQSSGGG GRHPSSSSES GEGSGGMRRC  180
THCASEKTPQ WRTGPLGPKT LCNACGVRFK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME  240
LRRQKEVMRQ PQQVQLHHHH HHPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g004220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171340.0AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19.
GenBankBT0009210.0BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds.
GenBankY136490.0Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508217.10.0PREDICTED: GATA transcription factor 2-like
SwissprotO497411e-151GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A384L0T51e-148A0A384L0T5_ARATH; GATA transcription factor
TrEMBLB9DGF31e-148B9DGF3_ARATH; GATA transcription factor
STRINGXP_010508217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-123GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]