PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g003800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 432aa MW: 48782 Da PI: 9.1802 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.8 | 7.9e-23 | 83 | 127 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ Csa05g003800.1 83 EPEPTRCRRTDGKKWRCSNKVLLYEKYCERHMHRGRKRSRKLVES 127 69***************************************9986 PP | |||||||
2 | WRC | 66.7 | 3e-21 | 306 | 349 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGK+WRC+r+vl+++k+C++H+hrg ++++k+ + Csa05g003800.1 306 DKEPGRCRRTDGKRWRCRRDVLSDQKYCDKHMHRGIKKKKKHPV 349 689*************************************9865 PP | |||||||
3 | QLQ | 31.8 | 4.4e-12 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQ+ ++ +Q l+y+y+ a++ vP++L++ i++ Csa05g003800.1 17 WMKAAQFVEFQMQTLVYRYIEAGLRVPHHLVVSIWN 52 789*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0034 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 12.532 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.652 | 83 | 127 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.3E-19 | 84 | 126 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.78 | 306 | 350 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.8E-17 | 308 | 347 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MEQDEELEVR RRKMMPWMKA AQFVEFQMQT LVYRYIEAGL RVPHHLVVSI WNSLALSSSS 60 NYNSHSSSLL SSNKGLNHID TVEPEPTRCR RTDGKKWRCS NKVLLYEKYC ERHMHRGRKR 120 SRKLVESSYK VASSSASLTK HDNTYGLDIN NDSESVLLHE TMSGSSNAQV VTIASLPSPR 180 ACDNVIRPSL VISESTKESV SHGDRSRRNV EMSYDDLISK KESSSIVSLL GDESLPSVQK 240 FFPEVSDSSL QAAQFSGNRK NEIIARSREW KNMNVVNGGL FHSIHFSQDT VLQDRGGLRL 300 QRVETDKEPG RCRRTDGKRW RCRRDVLSDQ KYCDKHMHRG IKKKKKHPVD TTIAHENASY 360 IPLTVKTAAR SVTCKDGDDQ KLSLLVMGIP LPRVSDEKTT SSCSTDTTIT DIALRGEEDS 420 EEILSLFSSG V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 123 | GRKRSRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g003800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019101170.1 | 0.0 | PREDICTED: growth-regulating factor 9 isoform X4 | ||||
Swissprot | Q8S9M3 | 0.0 | GRF9_ARATH; Growth-regulating factor 9 | ||||
TrEMBL | D7LCJ7 | 0.0 | D7LCJ7_ARALL; At2g45480/F4L23.1 | ||||
STRING | XP_010508164.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 0.0 | growth-regulating factor 9 |
Publications ? help Back to Top | |||
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