PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g003800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 432aa    MW: 48782 Da    PI: 9.1802
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g003800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.87.9e-2383127145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     ++ep rCrRtDGKkWRCs++vl  +k+CErH+hrgr+rsrk +e+
  Csa05g003800.1  83 EPEPTRCRRTDGKKWRCSNKVLLYEKYCERHMHRGRKRSRKLVES 127
                     69***************************************9986 PP

2WRC66.73e-21306349144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGK+WRC+r+vl+++k+C++H+hrg ++++k+ +
  Csa05g003800.1 306 DKEPGRCRRTDGKRWRCRRDVLSDQKYCDKHMHRGIKKKKKHPV 349
                     689*************************************9865 PP

3QLQ31.84.4e-121752237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    ++ aaQ+ ++ +Q l+y+y+ a++ vP++L++ i++
  Csa05g003800.1 17 WMKAAQFVEFQMQTLVYRYIEAGLRVPHHLVVSIWN 52
                    789*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.00341652IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166612.5321752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.65283127IPR014977WRC domain
PfamPF088794.3E-1984126IPR014977WRC domain
PROSITE profilePS5166721.78306350IPR014977WRC domain
PfamPF088798.8E-17308347IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEQDEELEVR RRKMMPWMKA AQFVEFQMQT LVYRYIEAGL RVPHHLVVSI WNSLALSSSS  60
NYNSHSSSLL SSNKGLNHID TVEPEPTRCR RTDGKKWRCS NKVLLYEKYC ERHMHRGRKR  120
SRKLVESSYK VASSSASLTK HDNTYGLDIN NDSESVLLHE TMSGSSNAQV VTIASLPSPR  180
ACDNVIRPSL VISESTKESV SHGDRSRRNV EMSYDDLISK KESSSIVSLL GDESLPSVQK  240
FFPEVSDSSL QAAQFSGNRK NEIIARSREW KNMNVVNGGL FHSIHFSQDT VLQDRGGLRL  300
QRVETDKEPG RCRRTDGKRW RCRRDVLSDQ KYCDKHMHRG IKKKKKHPVD TTIAHENASY  360
IPLTVKTAAR SVTCKDGDDQ KLSLLVMGIP LPRVSDEKTT SSCSTDTTIT DIALRGEEDS  420
EEILSLFSSG V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123GRKRSRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g003800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101170.10.0PREDICTED: growth-regulating factor 9 isoform X4
SwissprotQ8S9M30.0GRF9_ARATH; Growth-regulating factor 9
TrEMBLD7LCJ70.0D7LCJ7_ARALL; At2g45480/F4L23.1
STRINGXP_010508164.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.10.0growth-regulating factor 9
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]