PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g003340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BES1

Protein Properties

Length: 692aa MW: 77036.7 Da PI: 6.5387

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g003340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	155.1	5.3e-48	64	215	1	143
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..a 88 ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g+kp+ ++a aagssas a Csa05g003340.1 64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSAVAAGSSAShiA 158 689****************************************************************98889999999888888898888776 PP DUF822 89 spesslq..sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvl 143 s+++s +++s +spve +s+++k + p ps +d +++s++ + +v + + Csa05g003340.1 159 SQQTSPPalRVVSSGGHRSPVELSSCRMKGVFAPGPSPYDIPPTQSPELVGSVNKAD 215 777776664455566799**********************999986555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.5E-40	65	193	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.21E-173	242	690	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	7.6E-187	245	688	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.9E-95	251	671	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	282	296	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	303	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	325	346	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	329	337	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	6.9E-64	418	440	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	491	510	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	525	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	542	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	560	583	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.9E-64	600	622	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAA SGSSNEEFMF QQSMQDQVGT 60 PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE 120 AGWVVLPDGT TFPSKSQGTK PPGGSSAVAA GSSASHIASQ QTSPPALRVV SSGGHRSPVE 180 LSSCRMKGVF APGPSPYDIP PTQSPELVGS VNKADGLVGC SVDVINSKQI LEIPPNLTEQ 240 DFSGTPYVPV YVMLPLGVIN MKCELADRDG LLKHLRILKS IHVDGVKVDC WWGIVEGHSP 300 QEYNWNGYRQ LFQMVHDLNL KIQVLMSFHE CGGNVGDDVC IPLPHWVAEI GRTNPDIYFT 360 DREGRRNPEC LSWGIDKERV LRGRTALEVY FDYMRSFRIE LAEFVEDGVI SMIEIGLGPC 420 GELRYPSCPI KHGWRYPGVG EFQCYDKYLL KSLRKAADSR GHLFWARGPD NTGSYNSQPQ 480 GTGFFCDGGD YDGLYGRFFL KWYSQVLIDH ADQILSLAKL VFNSSCIAAK LPDVHWWYRT 540 ASHAAELTAG FYNPSNRDGY AAIASTLKKH GATLSFVSGE VQVLNRPDDF SGALGEPEAV 600 AWQVLNAAWD SETPIARENS LPCHDRVGYN KMLESVKFPN DPDRRHLSSF AYSRLIPALM 660 EGHNVVEFER FVKKLHGETV MNHHHQHHQQ V*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAA SGSSNEEFMF QQSMQDQVGT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPSKSQGTK PPGGSSAVAA GSSASHIASQ QTSPPALRVV SSGGHRSPVE  180
LSSCRMKGVF APGPSPYDIP PTQSPELVGS VNKADGLVGC SVDVINSKQI LEIPPNLTEQ  240
DFSGTPYVPV YVMLPLGVIN MKCELADRDG LLKHLRILKS IHVDGVKVDC WWGIVEGHSP  300
QEYNWNGYRQ LFQMVHDLNL KIQVLMSFHE CGGNVGDDVC IPLPHWVAEI GRTNPDIYFT  360
DREGRRNPEC LSWGIDKERV LRGRTALEVY FDYMRSFRIE LAEFVEDGVI SMIEIGLGPC  420
GELRYPSCPI KHGWRYPGVG EFQCYDKYLL KSLRKAADSR GHLFWARGPD NTGSYNSQPQ  480
GTGFFCDGGD YDGLYGRFFL KWYSQVLIDH ADQILSLAKL VFNSSCIAAK LPDVHWWYRT  540
ASHAAELTAG FYNPSNRDGY AAIASTLKKH GATLSFVSGE VQVLNRPDDF SGALGEPEAV  600
AWQVLNAAWD SETPIARENS LPCHDRVGYN KMLESVKFPN DPDRRHLSSF AYSRLIPALM  660
EGHNVVEFER FVKKLHGETV MNHHHQHHQQ V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-138	247	678	11	444	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g003340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK227323	0.0	AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508098.1	0.0	PREDICTED: beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	R0HB94	0.0	R0HB94_9BRAS; Beta-amylase
STRING	XP_010508098.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2945	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]