PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARF
Protein Properties Length: 610aa    MW: 67855.6 Da    PI: 6.522
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  Csa05g002640.1 127 FVKILTASDTSTHGGFSVLRKHATEClpsldMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGETG 219
                     89****************************9666677789************************************************..34899 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      l+v+v+r
  Csa05g002640.1 220 DLRVGVRR 227
                     99***998 PP
2Auxin_resp97.32.2e-32253332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tks+F v+Y+Pr   s+F+++v+k++ a+k+ +++GmRf+m+fe+e+s+er ++Gt+vg  dl++ +Wp SkWrsL+
  Csa05g002640.1 253 ASHAVNTKSIFIVLYKPRI--SQFIISVNKYMVAMKNGFALGMRFRMRFEGEESPERIFTGTIVGSGDLSS-QWPASKWRSLQ 332
                     789***************8..9**********************************************777.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-39112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-38120242IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-20126227No hitNo description
PROSITE profilePS5086312.125127229IPR003340B3 DNA binding domain
PfamPF023622.1E-21127227IPR003340B3 DNA binding domain
SMARTSM010193.5E-21127229IPR003340B3 DNA binding domain
PfamPF065073.6E-29253332IPR010525Auxin response factor
PfamPF023096.0E-9478534IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-14494574No hitNo description
PROSITE profilePS5174526.984498590IPR000270PB1 domain
PfamPF023091.1E-6544583IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MANVVVDADF RRSGTNEDDQ LYTELWKACA GPLVEVPRYG ERVFYFPQGH MEQLVASTNQ  60
GVVDQEIPVF NLPPKILCRV LSVVLKAEHE TDEVYAQITL HPEEDQSEPT SLDPPVVEPA  120
KPKVDSFVKI LTASDTSTHG GFSVLRKHAT ECLPSLDMTQ PTPTQELVAK DLHGYEWRFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGETGD LRVGVRRLAR QQSTMPASVI  240
SSQSMRLGVL ATASHAVNTK SIFIVLYKPR ISQFIISVNK YMVAMKNGFA LGMRFRMRFE  300
GEESPERIFT GTIVGSGDLS SQWPASKWRS LQIQWDEPST IQRPNKVSSW EIEPFSPSAL  360
TSAPTQPQSK SKRSRPIDSS VSEITGSSVA STYLSSFSQS HESNPSVKLL FHDPATERNL  420
NNSVFSSGLQ GKTTEAPGTS CCRLFGFDLT SKPSSSAPIP PEKQIISVNS NNSDSTTKCQ  480
DPNSSNSTKE QKQQTSTRSR TKVQMQGTAV GRAVDLTLLR SYDELIKELE KMFEIEGELS  540
PKDKWAVVFT DDEGDMMLVG DDPWDEFCKM AKKLFIYSSE EVKKMSSKSL LDDEGTIVNL  600
ESDQRTVHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1631935617356Auxin response factor 1
4ldw_A1e-1631935617356Auxin response factor 1
4ldw_B1e-1631935617356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2299240.0AK229924.1 Arabidopsis thaliana mRNA for ARF1 family auxin responsive transcription factor like protein, complete cds, clone: RAFL22-28-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508005.10.0PREDICTED: auxin response factor 11-like
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLR0HBF00.0R0HBF0_9BRAS; Auxin response factor
STRINGXP_010508005.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]