PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 375aa    MW: 41135.2 Da    PI: 9.1404
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.1e-3879138463
          zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     ++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  Csa05g002560.1  79 EKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 138
                     789*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2576128IPR003851Zinc finger, Dof-type
PfamPF027016.3E-3380135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.74281135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNSTH QSNTTSNARP NTTLTSNGVS AAGTTVSGVS  60
NNNNNNMAVV AERKARPLEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS  120
LRNVPVGGSS RKNKRSSSSS SSSNILQTIP SSLGLTTTLP DLNPPILFSN QIPNKSKGSS  180
QDLNLLSFPV MQDQHHHHHH HVHMSQFLQM PKMEGNGNIT HQQPSSSSSL YGSSSSALEL  240
LRTGVNVSSR SGINSFMPPG PMMDSNTVLY TSSGFPTMVD YKPSNLSFST DHQGLGHNNN  300
NNRSEAHNDH HHQGRVLFPF GDQMKELSSS ITQEVDHDEN QQQKSHGNNN NNNSSPSNGY  360
WSGMFSTTGG GSSW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507995.10.0PREDICTED: dof zinc finger protein DOF2.5-like
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY20.0R0HPY2_9BRAS; Uncharacterized protein
STRINGXP_010507995.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-174Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]