PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 260aa    MW: 30686.9 Da    PI: 4.8371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-193386356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++f++eq++ Le +Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Csa05g002480.1 33 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 86
                    6689*************************************************9 PP
2HD-ZIP_I/II124.26.1e-4033124293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++y+ L+++yd+l+++ e+L+ke+++L +el++
  Csa05g002480.1  33 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQR 124
                     68**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-181090IPR009057Homeodomain-like
PROSITE profilePS5007117.3782888IPR001356Homeobox domain
SMARTSM003897.0E-163192IPR001356Homeobox domain
CDDcd000862.31E-143189No hitNo description
PfamPF000463.6E-163386IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-183495IPR009057Homeodomain-like
PRINTSPR000317.9E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000317.9E-66884IPR000047Helix-turn-helix motif
PfamPF021831.3E-1588129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTEGKEYSPA MISSDPFMSM KKMKKSNVHN KNNQRRFSDE QIKSLEMMFE SETRLEPRKK  60
VQLARELGLQ PRQVAIWFQN KRARWKSKQL ETEYNILRQN YDNLASQFES LKKEKQALVS  120
ELQRLNEEML HQTKEEERQC CGDQAVVALS STDHESENEE NHPRCEPEEV RPEMEMYDEK  180
GHHGVLCDHH DHDDEDGYNS NIKREEYFGG FEEEPDHLMN IVEPADSCLT SSDDWRGFKS  240
DTSLLHQSSS NYPWWDFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458260.0AY045826.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-7 (At2g46680) mRNA, complete cds.
GenBankAY0913640.0AY091364.1 Arabidopsis thaliana putative homeodomain transcription factor protein ATHB-7 (At2g46680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507985.10.0PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-162ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLR0HUH21e-158R0HUH2_9BRAS; Uncharacterized protein
STRINGXP_010507985.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-164homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]