PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g001300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 339aa    MW: 38287.1 Da    PI: 6.2341
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g001300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-051545434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    r+C+ +++  +  +C+ ++  lC  C  + H
  Csa05g001300.1 15 RICDYCDSSVALVYCKADSAKLCLACDKQVH 45
                    79**************************999 PP
2zf-B_box21.35.5e-075999540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvv 40
                     C+ +++ + +lfCe+ ++ lC++C  ++H       H+++
  Csa05g001300.1 59 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAsstslHSRR 99
                    7**************************97744777777766 PP
3CCT60.36.6e-21292335144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Csa05g001300.1 292 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 335
                     899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-131259IPR000315B-box-type zinc finger
PROSITE profilePS501199.7831259IPR000315B-box-type zinc finger
CDDcd000211.33E-51559No hitNo description
PROSITE profilePS5011910.0455101IPR000315B-box-type zinc finger
CDDcd000214.16E-859100No hitNo description
SMARTSM003360.2860101IPR000315B-box-type zinc finger
PROSITE profilePS5101714.743292334IPR010402CCT domain
PfamPF062038.3E-15292334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMEKEEEEGH QRHRRICDYC DSSVALVYCK ADSAKLCLAC DKQVHVANQL FGKHFRSLLC  60
DSCHDSPSSL FCETERSVLC QNCDWQHHTA SSTSLHSRRP FEGFTGCPSV PELLSIVGLD  120
DLSPDSGLLW DQTPPEILSL NDLLVSGGSD THNFRATDVP PLPKNRHATC GKYKDEMIRQ  180
LRGLARSEPS CLKFEAASDA EIDAGFQFLA PDLFPTCELE SGMKWFDQQD EDFPYCSLLR  240
NLSGSVDKPE NVDRDSPVMV PVADSFNRCE EDHVMVPLCS TTATREINSL ERNSALSRYK  300
EKKKSRRYEK HIRYESRKVR AESRTRIRGR FAKAADPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g001300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935980.0AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507837.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLR0FWW40.0R0FWW4_9BRAS; Uncharacterized protein
STRINGXP_010507837.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]