PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g068030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 311aa    MW: 33035.6 Da    PI: 10.9346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g068030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12123168555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+       K +Ka++L k +eY++ Lq
  Csa04g068030.1 123 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDKIIEYVRFLQ 168
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-17116177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-12116172No hitNo description
PROSITE profilePS5088816.971118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMSQLKTTFG GAIIAVAHNV KELPQQVAEW FEIKNAAFLE GKASLEPQVV VLERLEGGGA  60
RSVVGRRRRI RRRRRRAEQE SGGPTIGSQD GLQAQGTVST TSAPVVRQKP RVRARRGQAT  120
DPHSIAERLR RERIAERMKS LQELVPNTNK TDKASMLDKI IEYVRFLQLQ VKVLSMSRLG  180
GAGAVGPRLN GLSAEAGGRL NALTAPCNGV NGNGNATGSS NESLRSTEQR VAKLMEEDMG  240
SAMQYLQGKG LCLMPISLAT AISSSSTHSR GSLFHPISNP VAAEDANVAA AVAAPEASST  300
MDDVSAASKA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774RRIRRRRR
26775RRIRRRRRR
36875RIRRRRRR
4127132RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g068030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886140.0AF488614.1 Arabidopsis thaliana clone bHLH082 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506835.11e-164PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-153BH082_ARATH; Transcription factor bHLH82
TrEMBLD7MNY81e-152D7MNY8_ARALL; Basic helix-loop-helix family protein
STRINGXP_010506835.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-112LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]