PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g067670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 176aa    MW: 20034.4 Da    PI: 5.1655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g067670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-204593355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++ a+ k++g
  Csa04g067670.1 45 YRGIRQRP-WGKWAAEIRDPRK---GTRVWLGTFKTAEEAARAYDVAAIKIRG 93
                    9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2444102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3444102IPR001471AP2/ERF domain
SMARTSM003802.0E-4144107IPR001471AP2/ERF domain
PROSITE profilePS5103225.10644101IPR001471AP2/ERF domain
PfamPF008473.3E-144593IPR001471AP2/ERF domain
CDDcd000182.34E-3545103No hitNo description
PRINTSPR003672.2E-124556IPR001471AP2/ERF domain
PRINTSPR003672.2E-126783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MCGGAVISDF IWSSQVGSVS SNKKRKPVSG VGGQRDGKRE RKNLYRGIRQ RPWGKWAAEI  60
RDPRKGTRVW LGTFKTAEEA ARAYDVAAIK IRGQKAKLNF PNTSIISDTN QKEMISENHQ  120
VESLLSEEEE ELMAFEDYMR FYQIPFLDDQ STTDLGNLWS FQEEEEEEDC LTTKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-24451021573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g067670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746453e-94AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506788.11e-112PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010506789.11e-112PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222591e-85ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLR0G1V44e-88R0G1V4_9BRAS; Uncharacterized protein
STRINGXP_010506788.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-73ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]