PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g064800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 93aa MW: 10431.2 Da PI: 4.5655 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 30.1 | 1.6e-09 | 64 | 90 | 1 | 27 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaa 27 ggs+r+++ +E+E++k+RER+RRai+a Csa04g064800.1 64 GGSRRSRPLEEKERTKLRERHRRAITA 90 689***********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAA SGSSDEEFMF QQSMQDQVGT 60 PGGGGSRRSR PLEEKERTKL RERHRRAITA SS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g064800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004665 | 2e-84 | AC004665.3 Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence. | |||
GenBank | AK227323 | 2e-84 | AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19. | |||
GenBank | CP002685 | 2e-84 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506568.1 | 3e-54 | PREDICTED: beta-amylase 7-like | ||||
Refseq | XP_010508098.1 | 3e-54 | PREDICTED: beta-amylase 7 | ||||
Refseq | XP_019100643.1 | 3e-54 | PREDICTED: beta-amylase 7-like | ||||
Swissprot | O80831 | 3e-36 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | R0HB94 | 1e-37 | R0HB94_9BRAS; Beta-amylase | ||||
STRING | XP_010506568.1 | 1e-53 | (Camelina sativa) | ||||
STRING | XP_010508098.1 | 1e-53 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 9e-14 | beta-amylase 7 |
Publications ? help Back to Top | |||
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