PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g064760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 263aa MW: 28681.2 Da PI: 6.6308

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g064760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.7e-21	95	150	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe +F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k Csa04g064760.1 95 KKRYHRHTPQQIQELELVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 150 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-21	80	153	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-22	90	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	92	152	IPR001356	Homeobox domain
SMART	SM00389	6.1E-18	93	156	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	95	150	IPR001356	Homeobox domain
CDD	cd00086	2.81E-19	95	150	No hit	No description
PROSITE pattern	PS00027	0	127	150	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	1.13E-5	148	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MNFSGFLHHD DDNSSGGGND FSSAAMSGGL VKSIFSSPRL SLGLQQTNGE ATRTGESFEV 60 SVSRRSPESR SGSDNAEALS GDDDFDASDR PLKKKKRYHR HTPQQIQELE LVFKECPHPD 120 EKQRLDLSRR LNLDSRQVKF WFQNRRTQMK AMNANQSSML ILQETSIDAS GAVVVHAPVD 180 IPAMHSVMKG ADSAYVALLP SGFGILPDGQ GMEETGSLLT VAFQILVNSL PTAKLNVESI 240 ETVNNLISCT VQKIRAALRC DK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g064760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507760.1	1e-109	PREDICTED: homeobox-leucine zipper protein HDG1-like
Swissprot	Q9M2E8	2e-53	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	R0FVJ9	1e-93	R0FVJ9_9BRAS; Uncharacterized protein
STRING	XP_010507760.1	1e-108	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	6e-55	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]