PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g063400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 377aa MW: 43323.9 Da PI: 9.8052

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g063400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.9	3.7e-23	96	140	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs+rvl +k+CErH+hrgr+rsrk +e+ Csa04g063400.1 96 EPEPTRCRRTDGKKWRCSNRVLLYEKYCERHMHRGRKRSRKLVES 140 69***************************************9987 PP
2	WRC	64.8	1.2e-20	333	374	1	42
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGK+WRCsr+vl+++k+C+ H+hrg ++++k+ Csa04g063400.1 333 DKEPGRCRRTDGKRWRCSRDVLSDQKYCDEHMHRGVKKKKKH 374 689***********************************9997 PP
3	QLQ	32.1	3.7e-12	29	64	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQ+ ++ +Q l+y+y+ a++ vP++L++ i++ Csa04g063400.1 29 WMKAAQFVEFQMQTLVYRYIEAGLRVPHHLVVSIWN 64 789*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0034	28	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	12.532	29	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-5	31	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.967	96	140	IPR014977	WRC domain
Pfam	PF08879	2.1E-19	97	139	IPR014977	WRC domain
PROSITE profile	PS51667	21.174	333	376	IPR014977	WRC domain
Pfam	PF08879	3.5E-17	335	374	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MLFSSWEMQS PKMEQDEELE ERRRKILPWM KAAQFVEFQM QTLVYRYIEA GLRVPHHLVV 60 SIWNSLALST SSSNYNSHSS SLLSSDKGLN HIHTVEPEPT RCRRTDGKKW RCSNRVLLYE 120 KYCERHMHRG RKRSRKLVES SYKVASSSAS LTKHDNTYGL DINNDSESVL HETMSGSSNA 180 QVVTIASLPS PRACDNVIRP SLVISESTEK SVSHGDRSRR NMEMSYDDLI SKKKSSMCVS 240 VVPLQGDESL PSVQKFFPEV SDSSLQAAQF SGNRKNEIIA RSREWKNMNV VNGGLFHSIH 300 FSQDTVLQDR GELRLQRVET DRGGFRLQRV ETDKEPGRCR RTDGKRWRCS RDVLSDQKYC 360 DEHMHRGVKK KKKHPC*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MLFSSWEMQS PKMEQDEELE ERRRKILPWM KAAQFVEFQM QTLVYRYIEA GLRVPHHLVV  60
SIWNSLALST SSSNYNSHSS SLLSSDKGLN HIHTVEPEPT RCRRTDGKKW RCSNRVLLYE  120
KYCERHMHRG RKRSRKLVES SYKVASSSAS LTKHDNTYGL DINNDSESVL HETMSGSSNA  180
QVVTIASLPS PRACDNVIRP SLVISESTEK SVSHGDRSRR NMEMSYDDLI SKKKSSMCVS  240
VVPLQGDESL PSVQKFFPEV SDSSLQAAQF SGNRKNEIIA RSREWKNMNV VNGGLFHSIH  300
FSQDTVLQDR GELRLQRVET DRGGFRLQRV ETDKEPGRCR RTDGKRWRCS RDVLSDQKYC  360
DEHMHRGVKK KKKHPC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g063400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518165.1	0.0	PREDICTED: growth-regulating factor 9-like isoform X1
Swissprot	Q8S9M3	1e-174	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	D7LCJ7	0.0	D7LCJ7_ARALL; At2g45480/F4L23.1
STRING	XP_010506496.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-164	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]