PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g062260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 628aa    MW: 70233.5 Da    PI: 9.5317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g062260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-123688248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++W t+E++ll++avk++G g+W+++a ++          ++++ck+++++++
   Csa04g062260.1 36 QAWGTWEELLLACAVKRHGFGDWDSVATEVRsrsslsDLVSANNCKHKYRDLK 88
                     68*****************************99888855699*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-62795IPR009057Homeodomain-like
PROSITE profilePS500906.2493088IPR017877Myb-like domain
SuperFamilySSF466896.32E-73192IPR009057Homeodomain-like
SMARTSM007174.5E-63490IPR001005SANT/Myb domain
PfamPF002491.6E-113688IPR001005SANT/Myb domain
CDDcd001676.25E-73788No hitNo description
SMARTSM002971.6E-22275384IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-16277409IPR001487Bromodomain
SuperFamilySSF473703.92E-18277384IPR001487Bromodomain
CDDcd043691.78E-16289379No hitNo description
PfamPF004394.8E-12289365IPR001487Bromodomain
PROSITE profilePS5001412.899294357IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MNVDDTNNND YTCTDDCIEE DDENNKNTNK KRQTQQAWGT WEELLLACAV KRHGFGDWDS  60
VATEVRSRSS LSDLVSANNC KHKYRDLKRR FHEKEQTDAA ATAEEEDGKD EKVGNNNISW  120
LEQLRNLRIA ELRREVKRYD VSILSLQLKV KNLEEEREEE KPDLEEEMKT ERSENVGSET  180
EHREKAEESD RDNGSMNESN STETVGEDER VGGDEPSQTR DGDNNNPDPV SKDTAEEERS  240
VSRGSEASHS DELGESGTSE GKWKRKRRKH GGSDEIRSGE SKSQPLIGLL DLIRSHPRGS  300
LFERRLRSQE AKDYKSMVKQ HLDIETIQRK LKQGYYDSST LTFYRDLQLL FTNAIVFFPL  360
SSAESMAAHE LRAVVSQELR KETGEYGPTL IKREVSAMDS GKADAETSDS SLSREKSPAL  420
LVVCKKRSSV STKASPSSSS FSQKEETKEE TLSEEKENIG TGVRSSRRAN KVVAATAAAI  480
SNITKKGKSK NKQKQTESKT NSSHNNSSKE ETGKTEKKMI SLDKKKSVAD FLKRLKNSPQ  540
KESKDQNKSI GGGKKDSKTK QRELRSSSVG KKKAAVENTP VKRAPGRPQK KTKEAGATAT  600
ASATGKRGRD TGSTGKDNKQ PKKRIRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g062260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506369.10.0PREDICTED: uncharacterized protein DDB_G0283697
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGXP_010506369.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein