PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g061140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 935aa MW: 103254 Da PI: 5.2891

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g061140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.8e-28	588	638	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Csa04g061140.1 588 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 638 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.574	577	658	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	590	638	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-23	823	920	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.5E-23	832	913	No hit	No description
SMART	SM00666	3.3E-24	834	916	IPR000270	PB1 domain
PROSITE profile	PS51745	21.345	834	920	IPR000270	PB1 domain
CDD	cd06407	1.95E-37	835	915	No hit	No description
Pfam	PF00564	8.4E-18	837	915	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MENPFASREK GFGYQDVPTE QMDAFTTSFG SGVRSLISDE LLNSSSELLN FDSFAAWCNT 60 PSAADILFSQ YGLLNSQPMP FGALTSFHAA DSPKATSLTR SFRDLETSYF GEETSLVPEM 120 SSLLHRSLDN DVLSGKRRRV NNQKIGFPDL LNCTIPRSLS HSLDEKMLKA LSLFMESSGS 180 GEGILAQVWT PIKTGDQYVL STCDQAYLLD PRLSQYREVS RKFTFAAEAN QCSFLGLPGR 240 VFVSGVPEWT SNVMYYKTDE YLRMKHAIDN EVRGSMAIPV LEASGTSCCA VMEFVTCKEK 300 PNFDMEMDSV CRSLQAVNLR TTAIPRPQYR SSNQRDALAE IQDVLRAVSH AHKLPLALAW 360 IPCRKDQSIR VPGPNSGENC VLCIEETACY VNDMEMEGFM HACLEHCLRE KEGIVGKAFK 420 SNQPFFSSDV KAYDISEYPL VQHARKYCLN AAVALKLRST YTGEDDYILE LFLPVSMKGS 480 LEQQLLLDSL SGTMQRICRT LRTVSEVGST KKEVTKPGVQ SGEMSNFPQT TCLANFQTTS 540 LDSEYNSTRS IFSGMSSDKD NGITVSQGIL EQDMSKARIP EKKKSTTEKN VSLSILQQHF 600 SGSLKDAAKS LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK 660 FDSATGEFIA VGPFIQELDT QKGLVSHIND THARKSQEDM TDDTSFELQE AKFVDNAVKL 720 EEDITMNHAS PGSFMEVNAG QPWAWMAEQS CLNGSEGIKS VCNLSSLAIS DGMDPTLRCS 780 GSIVEPNQSM SCSISDSSNG SGAVMRGSSS TSVEDWNQMR SHNNNSGGES GSTTLIVKAT 840 YREDTVRFKF EPSVGCSQLY KEVGKRFKLQ DGSFQLKYLD DEEEWVMLVT DSDLQECLEI 900 LYGMGKQSVK FMVRDLPPPI GSSAGSNGYL GTCL*

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MENPFASREK GFGYQDVPTE QMDAFTTSFG SGVRSLISDE LLNSSSELLN FDSFAAWCNT  60
PSAADILFSQ YGLLNSQPMP FGALTSFHAA DSPKATSLTR SFRDLETSYF GEETSLVPEM  120
SSLLHRSLDN DVLSGKRRRV NNQKIGFPDL LNCTIPRSLS HSLDEKMLKA LSLFMESSGS  180
GEGILAQVWT PIKTGDQYVL STCDQAYLLD PRLSQYREVS RKFTFAAEAN QCSFLGLPGR  240
VFVSGVPEWT SNVMYYKTDE YLRMKHAIDN EVRGSMAIPV LEASGTSCCA VMEFVTCKEK  300
PNFDMEMDSV CRSLQAVNLR TTAIPRPQYR SSNQRDALAE IQDVLRAVSH AHKLPLALAW  360
IPCRKDQSIR VPGPNSGENC VLCIEETACY VNDMEMEGFM HACLEHCLRE KEGIVGKAFK  420
SNQPFFSSDV KAYDISEYPL VQHARKYCLN AAVALKLRST YTGEDDYILE LFLPVSMKGS  480
LEQQLLLDSL SGTMQRICRT LRTVSEVGST KKEVTKPGVQ SGEMSNFPQT TCLANFQTTS  540
LDSEYNSTRS IFSGMSSDKD NGITVSQGIL EQDMSKARIP EKKKSTTEKN VSLSILQQHF  600
SGSLKDAAKS LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK  660
FDSATGEFIA VGPFIQELDT QKGLVSHIND THARKSQEDM TDDTSFELQE AKFVDNAVKL  720
EEDITMNHAS PGSFMEVNAG QPWAWMAEQS CLNGSEGIKS VCNLSSLAIS DGMDPTLRCS  780
GSIVEPNQSM SCSISDSSNG SGAVMRGSSS TSVEDWNQMR SHNNNSGGES GSTTLIVKAT  840
YREDTVRFKF EPSVGCSQLY KEVGKRFKLQ DGSFQLKYLD DEEEWVMLVT DSDLQECLEI  900
LYGMGKQSVK FMVRDLPPPI GSSAGSNGYL GTCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	139	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g061140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506231.1	0.0	PREDICTED: protein NLP8 isoform X1
Refseq	XP_019100601.1	0.0	PREDICTED: protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010506231.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]