PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g060750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 36922.9 Da PI: 7.2194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 243 | 288 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Ave+Ik Lq Csa04g060750.1 243 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 288 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.075 | 237 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 240 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-11 | 241 | 292 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-12 | 242 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 243 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-9 | 243 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MYPPKSSKSS APDGVDSDIN QYESAAGATR DFSSLGPQTH HPLPPPRQQQ HNPNVVGHYI 60 SGEPSSVGFD SGASSSSLFR HRSSPAGFYD QHLPTDPNGF SLGRPNGGYG GGGGGGGERG 120 PSRLKSELRF SGGSSSHQEH NSLPRISEVE AAAAAIDGVA SSSMNFGNDH TNNWDNSSSH 180 ISFTIDQPGK RSKNSDFFTL ETQFSMPQTS LEMARMENLM NIPEDSVPCR VRAKRGFATH 240 PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VEVRPYISSI 300 YVVQSDMFSN GRKVTGKGNG EMYLWGMQEA MIMNDMFP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g060750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004450 | 6e-97 | AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence. | |||
GenBank | CP002685 | 6e-97 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506173.1 | 0.0 | PREDICTED: transcription factor bHLH129-like isoform X1 | ||||
Swissprot | Q9ZW81 | 1e-155 | BH129_ARATH; Transcription factor bHLH129 | ||||
TrEMBL | R0HDD9 | 0.0 | R0HDD9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010506173.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10329 | 18 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43140.1 | 1e-132 | bHLH family protein |