PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g058000.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

VOZ

Protein Properties

Length: 398aa MW: 44730.4 Da PI: 4.5518

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g058000.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	363.5	7.8e-112	197	375	2	180
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 ppsaflgpkcalwdctrpa+gsew+ dycs++hatlalne++pg tpvlrp+gi+lkd+ll++al+ak+qgk+vgip+cega+++k+pwnaaelf Csa04g058000.1 197 PPSAFLGPKCALWDCTRPAHGSEWYLDYCSNYHATLALNEDSPGATPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELF 291 7******************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 +l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++sfewhl+ey+i+e+d+ Csa04g058000.1 292 HLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGSFEWHLFEYQISESDEK 375 *******************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSNHPKMTWR HGDLALLEAQ ISQNLREWQA ELTAPSPESS LLGEGISQYL EVFAEFAPLL 60 KLDEEDDATS TLKEHAAPKP EPEGFAQTLC PPEWTSDHFS QSPFNGNFSC GVEDAGNNTE 120 THGQQLHYAF EGFDSSINTA PDFHDQKLSN LDITSQYDYI CSEVRQELDN SPSIKLDSSE 180 EIENFAEFTT PSSVRVPPSA FLGPKCALWD CTRPAHGSEW YLDYCSNYHA TLALNEDSPG 240 ATPVLRPGGI SLKDNLLIDA LRAKTQGKNV GIPVCEGAVN TKCPWNAAEL FHLELVEGET 300 IREWLFFDKP RRAYDSGNRK QRSLPDYSGR GWHESRKQLM KEQEGQKRSY YMDPQPPGSF 360 EWHLFEYQIS ESDEKMGQFK VASDKPSPQS NSRLLQQ*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSNHPKMTWR HGDLALLEAQ ISQNLREWQA ELTAPSPESS LLGEGISQYL EVFAEFAPLL  60
KLDEEDDATS TLKEHAAPKP EPEGFAQTLC PPEWTSDHFS QSPFNGNFSC GVEDAGNNTE  120
THGQQLHYAF EGFDSSINTA PDFHDQKLSN LDITSQYDYI CSEVRQELDN SPSIKLDSSE  180
EIENFAEFTT PSSVRVPPSA FLGPKCALWD CTRPAHGSEW YLDYCSNYHA TLALNEDSPG  240
ATPVLRPGGI SLKDNLLIDA LRAKTQGKNV GIPVCEGAVN TKCPWNAAEL FHLELVEGET  300
IREWLFFDKP RRAYDSGNRK QRSLPDYSGR GWHESRKQLM KEQEGQKRSY YMDPQPPGSF  360
EWHLFEYQIS ESDEKMGQFK VASDKPSPQS NSRLLQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g058000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125257	0.0	AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds.
GenBank	AF361831	0.0	AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.
GenBank	AY078048	0.0	AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517762.1	0.0	PREDICTED: transcription factor VOZ2
Refseq	XP_010517763.1	0.0	PREDICTED: transcription factor VOZ2
Swissprot	Q9SLB9	0.0	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	R0FVW1	0.0	R0FVW1_9BRAS; Uncharacterized protein
STRING	XP_010517761.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	0.0	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]